BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1300.1
(374 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 69 9e-13
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 59 1e-09
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 59 3e-09
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 46 4e-05
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 31 INLKLDSEIFLLWRPQVLCLLESQRLVHHLDNTVPPSGPTLASPTGSLTVNPLYKSWLTT 90
+ L ++ + WR L S ++ H+D T+ PT + VN W
Sbjct: 22 VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL--------LPTNANDVN-----WQKR 68
Query: 91 DRLVFSIIYNSLS-KEAMTDIIGLTRAADVWAQLNQTYASPCITRSLQLKEQIQCIKRGN 149
D +V +Y +L+ K+ + + + D+W ++ + + R+L+L +++ G+
Sbjct: 69 DGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGD 128
Query: 150 ASIADYARNYRVLSETLATTGHHISEAEKVYWFLKGHGPDYETLAGSILFKPPLPTFKDI 209
+ADY R + L+++L +++ V + L G P ++ + I + P P+F D
Sbjct: 129 MRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDA 188
Query: 210 LPMLQAQEGVIK 221
MLQ +E +K
Sbjct: 189 ATMLQEEEDRLK 200
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 32/226 (14%)
Query: 19 PTMISYPHLSSMINLKLDSEIFLLWRPQVLCLLESQRLVHHLDNTVPPSGPTLASPTGSL 78
P I +P S+ L D + ++ W+ + L + +D T+P P
Sbjct: 21 PPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDP--------- 71
Query: 79 TVNPLYKSWLTTDRLVFSIIYNSLSKEAMTDIIGLTRAADVWAQLNQTYASPCITRSL-Q 137
+PLY+ W + +V + NS++ + + ++ A +W L + + PC+ + Q
Sbjct: 72 -FSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFV-PCVDLKIYQ 129
Query: 138 LKEQIQCIKRGNASIADY----ARNYRVLSE--------------TLATTGHHISEAEKV 179
L+ ++ +++G S+ +Y ++ + LSE E E+
Sbjct: 130 LRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQR 189
Query: 180 YWFLKG--HGPDYETLAGSILFKPPLPTFKDILPMLQAQEGVIKSF 223
Y FL G +E + I+F+ P P+ + M++ E ++K +
Sbjct: 190 YEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAESMMKWY 235
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 30 MINLKLDSEIFLLWRPQVLCLLESQRLVHHLDNTVPPSGPTLASPTGSLTVNPLY-KSWL 88
+ L L+ + +WR L S ++ H+D GS T P+ K W
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHID--------------GSSTPTPMTEKRWK 68
Query: 89 TTDRLVFSIIYNSLSKEAMTDIIGLT-RAADVWAQLNQTYASPCITRSLQLKEQIQCIKR 147
D LV IY +++ + II + A D+W L + R+LQ + +++
Sbjct: 69 ERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTI 128
Query: 148 GNASIADYARNYRVLSETLATTGHHISEAEKVYWFLKGHGPDYETLAGSILFKPPLPTFK 207
+ S+ +Y + + LS+ L IS+ V L G Y+ + I K P P+F
Sbjct: 129 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 188
Query: 208 DILPMLQAQE 217
+ ML +E
Sbjct: 189 EARSMLLMEE 198
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 115/276 (41%), Gaps = 21/276 (7%)
Query: 26 HLSSMINL-KLDSEIFLLWRPQVLCLLESQRLVHHLDNTVPPSGPTLA---SPTGSLTVN 81
H S+I + + D + +L W Q+ L+ +L + L P G + +P +
Sbjct: 188 HGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRAD 247
Query: 82 PLYKSWLTTDRLVFSIIYNSLSKEAMTDII-GLTRAADVWAQLNQTY-ASPCITRSLQLK 139
K WL D L ++ + NSLS A ++W +L Y ++ Q++
Sbjct: 248 ATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVR 307
Query: 140 EQIQCIKRGNASIADYARNYRVLSETLATTGHHISEAEKVYWFLKGHGPDYETLAGSILF 199
+ I+ I + + + +++++ + G + EA V + P + ++
Sbjct: 308 KYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLME 367
Query: 200 KPPLPTFKDILPMLQAQEGVIKSFRVVPHITEGAYVSTHN--SGHRQY-RSPQRSSHYDR 256
+ LP + ++ ++A+E ++++ GA T+ +G Q R+P + + R
Sbjct: 368 EEYLPVWM-LMERVKAEEELLRN---------GAKGVTYRPATGSSQMERTPSLGTTH-R 416
Query: 257 SSRSPPRHDRRPTRSTPT-FVCQWCKKPGHSADRCF 291
S+S + P R VC C + GH A C+
Sbjct: 417 GSQSVGWKRKEPERDERVIIVCDNCGRKGHLAKHCW 452