BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g1310.1
         (527 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    64   7e-12
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like...    51   1e-07

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 63.9 bits (154), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 34  SSTSVSVKAPLAIWHSRLGHVSSRVLDILIKDNLIQSVSKNSMSSTCISCDMSKSHRFPF 93
           S+ + + K    +WHSRL H+S R +++L+K   + S SK S    C  C   K+HR  F
Sbjct: 59  SNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDS-SKVSSLKFCEDCIYGKTHRVNF 117

Query: 94  TLNNKRASSPLALVHIDLWGPSPVPNS 120
           +       +PL  VH DLWG   VP S
Sbjct: 118 STGQHTTKNPLDYVHSDLWGAPSVPLS 144


>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
           superfamily protein | ChrM:207553-207915 REVERSE
           LENGTH=120 | 201606
          Length = 120

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 212 HRHITETGPSLLFHSGLPAIYWVEAFQTTNFLINRMPTTVLQDASPFSTLYGKPPSYSML 271
           +R I E   S+L   GLP  +  +A  T   +IN+ P+T +    P    +   P+YS L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 272 RSFGCVSFSYLRPYASNKLSPRS 294
           R FGCV++ +       KL PR+
Sbjct: 62  RRFGCVAYIHCD---EGKLKPRA 81

Top