BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1320.1
(212 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 194 5e-57
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 194 5e-57
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 75 1e-16
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 66 7e-13
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 194 bits (493), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 138/205 (67%), Gaps = 4/205 (1%)
Query: 4 VGSKWVFRTKLKPNGTIDRYKARLVAQGFTQKPGLDFDETFSHVVKPTTIQIILSIAVSR 63
+G KWV++ K +GTI+RYKARLVA+G+TQ+ G+DF ETFS V K T++++IL+I+
Sbjct: 127 IGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186
Query: 64 GWSILQLDGKNAFLHGDLTEEVYMAQPPGYV----DTSHPSYVCRLHKALYGLKQVPRAW 119
+++ QLD NAFL+GDL EE+YM PPGY D+ P+ VC L K++YGLKQ R W
Sbjct: 187 NFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQW 246
Query: 120 YDKFSSYLLRIGFRVSKSDTSLFIRTTLVGMIYLLLYVDDIILTGADSSTIDTIISQLSS 179
+ KFS L+ GF S SD + F++ T + +L+YVDDII+ + + +D + SQL S
Sbjct: 247 FLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKS 306
Query: 180 EFDMKTMGSLHYFVGIEATSNKDGL 204
F ++ +G L YF+G+E + G+
Sbjct: 307 CFKLRDLGPLKYFLGLEIARSAAGI 331
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 194 bits (493), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 138/205 (67%), Gaps = 4/205 (1%)
Query: 4 VGSKWVFRTKLKPNGTIDRYKARLVAQGFTQKPGLDFDETFSHVVKPTTIQIILSIAVSR 63
+G KWV++ K +GTI+RYKARLVA+G+TQ+ G+DF ETFS V K T++++IL+I+
Sbjct: 127 IGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186
Query: 64 GWSILQLDGKNAFLHGDLTEEVYMAQPPGYV----DTSHPSYVCRLHKALYGLKQVPRAW 119
+++ QLD NAFL+GDL EE+YM PPGY D+ P+ VC L K++YGLKQ R W
Sbjct: 187 NFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQW 246
Query: 120 YDKFSSYLLRIGFRVSKSDTSLFIRTTLVGMIYLLLYVDDIILTGADSSTIDTIISQLSS 179
+ KFS L+ GF S SD + F++ T + +L+YVDDII+ + + +D + SQL S
Sbjct: 247 FLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKS 306
Query: 180 EFDMKTMGSLHYFVGIEATSNKDGL 204
F ++ +G L YF+G+E + G+
Sbjct: 307 CFKLRDLGPLKYFLGLEIARSAAGI 331
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 74.7 bits (182), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 2 NIVGSKWVFRTKLKPNGTIDRYKARLVAQGFTQKPGLDFDETFSHVVKPTTIQIILSIA 60
NI+G KWVF+TKL +GT+DR KARLVA+GF Q+ G+ F ET+S VV+ TI+ IL++A
Sbjct: 67 NILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 65.9 bits (159), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 44/56 (78%)
Query: 151 IYLLLYVDDIILTGADSSTIDTIISQLSSEFDMKTMGSLHYFVGIEATSNKDGLYL 206
+YLLLYVDDI+LTG+ ++ ++ +I QLSS F MK +G +HYF+GI+ ++ GL+L
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFL 56