BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1390.1
(264 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G32450.1 | RNA binding (RRM/RBD/RNP motifs) family protein | ... 357 e-125
AT5G46870.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 203 2e-64
AT5G46870.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 203 2e-64
AT5G16840.2 | binding partner of acd11 1 | Chr5:5536042-5538026 ... 196 3e-62
AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 198 4e-62
>AT5G32450.1 | RNA binding (RRM/RBD/RNP motifs) family protein |
Chr5:12079707-12081317 FORWARD LENGTH=267 | 201606
Length = 267
Score = 357 bits (916), Expect = e-125, Method: Compositional matrix adjust.
Identities = 186/266 (69%), Positives = 215/266 (80%), Gaps = 2/266 (0%)
Query: 1 MQT-RTVQVGHVSDLAGEREIAEFFSFSGDIEHIEIHG-IGQSKTAFVTFKDPKALEIAL 58
MQT R+VQV +VSDLA EREI EFFSFSGDIEHIEI GQS+ AFVTF DPKALEIAL
Sbjct: 1 MQTTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIAL 60
Query: 59 LLSGATIVDQIVSITPVENYVPKVEEPDVIVVDGIVSVAPAEYPQTNTESTSSPQRVYVN 118
LLSGATIVDQIV+IT ENYV + E +V ++D + + E + R YV+
Sbjct: 61 LLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVS 120
Query: 119 KAQDVVATMLAKGSAIGQEAVNRAKAFDEKHRLIASASERVVSFDKRVGLTEKLIVGIST 178
KAQDVVAT+LAKGSA+GQ+AVN+AKAFDEKH+L A+AS +V SFDKRVGLTEKL VGIS
Sbjct: 121 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 180
Query: 179 VNEKVKSVDQKLHVSDKTMAALTAAERKLNNTGSAVKTSRYVTAGAAWFSGAFSKVAKTG 238
VNEKVKSVDQKL VSDKTMAA+ AAERKLN+TGSAVK+SRYVTAGAAWFSGAFSKVA+ G
Sbjct: 181 VNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 240
Query: 239 QVMGTKTREKFQSAVSNLRTNNPIVA 264
QV G+KT+EKF AVSN+ + + +A
Sbjct: 241 QVAGSKTKEKFNLAVSNMSSKDTPIA 266
>AT5G46870.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:19015486-19016990 FORWARD LENGTH=295 | 201606
Length = 295
Score = 203 bits (517), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 169/253 (66%), Gaps = 18/253 (7%)
Query: 1 MQTRTVQVGHVSDLAGEREIAEFFSFSGDIEHIEIHGIGQ-SKTAFVTFKDPKALEIALL 59
M TV+V +VS A ER++ EFFSFSGDI ++E SK A+VTFKD + E A+L
Sbjct: 1 MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60
Query: 60 LSGATIVDQIVSITPVENY-VPKVEEPDVIVVDGIVSVAPAEYPQTNTESTSSPQRVYVN 118
L+G+TIVD V++T +Y +P PD + A E + + +S SSP R V+
Sbjct: 61 LTGSTIVDSSVTVTMSPDYQLP----PDAL--------ASIESLKESNKS-SSPTREDVS 107
Query: 119 ---KAQDVVATMLAKGSAIGQEAVNRAKAFDEKHRLIASASERVVSFDKRVGLTEKLIVG 175
KA+DVV+ M++KG +G++A+ +AK+ DEKH+L ++AS RV SFDKR+G TEK+ G
Sbjct: 108 VFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTG 167
Query: 176 ISTVNEKVKSVDQKLHVSDKTMAALTAAERKLNNTGSAVKTSRYVTAGAAWFSGAFSKVA 235
+ V+EKVK VDQK V++KT +A+ AAE+ ++N GSA+ +RYV GA W +GAF++V+
Sbjct: 168 TTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVS 227
Query: 236 KTGQVMGTKTREK 248
K + +G K +EK
Sbjct: 228 KAAEEVGQKAKEK 240
>AT5G46870.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:19015486-19016990 FORWARD LENGTH=295 | 201606
Length = 295
Score = 203 bits (517), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 169/253 (66%), Gaps = 18/253 (7%)
Query: 1 MQTRTVQVGHVSDLAGEREIAEFFSFSGDIEHIEIHGIGQ-SKTAFVTFKDPKALEIALL 59
M TV+V +VS A ER++ EFFSFSGDI ++E SK A+VTFKD + E A+L
Sbjct: 1 MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60
Query: 60 LSGATIVDQIVSITPVENY-VPKVEEPDVIVVDGIVSVAPAEYPQTNTESTSSPQRVYVN 118
L+G+TIVD V++T +Y +P PD + A E + + +S SSP R V+
Sbjct: 61 LTGSTIVDSSVTVTMSPDYQLP----PDAL--------ASIESLKESNKS-SSPTREDVS 107
Query: 119 ---KAQDVVATMLAKGSAIGQEAVNRAKAFDEKHRLIASASERVVSFDKRVGLTEKLIVG 175
KA+DVV+ M++KG +G++A+ +AK+ DEKH+L ++AS RV SFDKR+G TEK+ G
Sbjct: 108 VFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTG 167
Query: 176 ISTVNEKVKSVDQKLHVSDKTMAALTAAERKLNNTGSAVKTSRYVTAGAAWFSGAFSKVA 235
+ V+EKVK VDQK V++KT +A+ AAE+ ++N GSA+ +RYV GA W +GAF++V+
Sbjct: 168 TTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVS 227
Query: 236 KTGQVMGTKTREK 248
K + +G K +EK
Sbjct: 228 KAAEEVGQKAKEK 240
>AT5G16840.2 | binding partner of acd11 1 | Chr5:5536042-5538026
FORWARD LENGTH=260 | 201606
Length = 260
Score = 196 bits (499), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 160/250 (64%), Gaps = 21/250 (8%)
Query: 2 QTRTVQVGHVSDLAGEREIAEFFSFSGDIEHIEIHGIGQSKTAFVTFKDPKALEIALLLS 61
Q R+V+VG++S A E +I EFFSFSG++E I+I + +A+VTFK+ + E A+LLS
Sbjct: 4 QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNE-HSAYVTFKETQGAETAVLLS 62
Query: 62 GATIVDQIVSITPVENYVPKVEEPDVIVVDGIVSVAPAEYPQTNTESTSSPQRVYVNKAQ 121
GA+I DQ V I NY P AP + E+ SS V KA+
Sbjct: 63 GASIADQSVIIELAPNYSPPA--------------AP------HAETQSSGAESVVQKAE 102
Query: 122 DVVATMLAKGSAIGQEAVNRAKAFDEKHRLIASASERVVSFDKRVGLTEKLIVGISTVNE 181
DVV++MLAKG +G++AV +AKAFDEKH ++A+ V S D+++GL++KL G S VNE
Sbjct: 103 DVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNE 162
Query: 182 KVKSVDQKLHVSDKTMAALTAAERKLNNTGSAVKTSRYVTAGAAWFSGAFSKVAKTGQVM 241
K+K+VDQ V+++T + AAE+ +++ GSAV +RYV G +W +GAF++VA+ +
Sbjct: 163 KIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEV 222
Query: 242 GTKTREKFQS 251
G KT+EK ++
Sbjct: 223 GQKTKEKVEA 232
>AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr4:9862660-9864498 REVERSE LENGTH=313 | 201606
Length = 313
Score = 198 bits (503), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 1 MQTRTVQVGHVSDLAGEREIAEFFSFSGDIEHIEIHG-IGQSKTAFVTFKDPKALEIALL 59
M TV+V +VS A +R++ EFFSFSGDI ++E ++K A+VTFKD + E A+L
Sbjct: 1 MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60
Query: 60 LSGATIVDQ--IVSITPVENYVPKVEEPDVIVVDGIVSVAPAEYPQTNTESTSSPQ--RV 115
LSGATIVD IVS+ P P + + S+ P +S SP+
Sbjct: 61 LSGATIVDSSVIVSMAPDYQLSP----------EALASLEP-------KDSNKSPKAGDS 103
Query: 116 YVNKAQDVVATMLAKGSAIGQEAVNRAKAFDEKHRLIASASERVVSFDKRVGLTEKLIVG 175
+ KA+DVV++MLAKG +G++A+ +AK+ DEKH+L ++AS +V SFDK++G T+K+ G
Sbjct: 104 VLRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTG 163
Query: 176 ISTVNEKVKSVDQKLHVSDKTMAALTAAERKLNNTGSAVKTSRYVTAGAAWFSGAFSKVA 235
V EKV+ VDQK VS+KT +A+ AAE+ ++N GSA+ +RYV GA W +GAF+KVA
Sbjct: 164 TVVVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVA 223
Query: 236 KTGQVMGTKTREK 248
K + +G K +EK
Sbjct: 224 KAAEEVGQKAKEK 236