BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1400.1
(296 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19260.2 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 187 1e-54
AT2G19260.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 187 1e-54
AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein | Ch... 52 2e-07
AT5G24330.1 | TRITHORAX-RELATED PROTEIN 6 | Chr5:8295245-8296997... 49 2e-06
AT1G63490.2 | transcription factor jumonji (jmjC) domain-contain... 46 4e-05
>AT2G19260.2 | RING/FYVE/PHD zinc finger superfamily protein |
Chr2:8357331-8359931 FORWARD LENGTH=631 | 201606
Length = 631
Score = 187 bits (476), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 133/229 (58%), Gaps = 26/229 (11%)
Query: 66 RTCGHLDNP---LKMLICDHCEDAFHVTCCNPRIKTIP-VDEWYCQPCSKKKCVLSSESN 121
R C H D P KMLICD CE+A+H CC ++K + +DEW C C K +
Sbjct: 410 RQCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLK--------NQ 461
Query: 122 SEKGGAKKYRSGKSKEKLNPISFMLKDNEPYTTGVRMGKAFQADVPDWSGPISNDINCFG 181
S K K S + K ++ P+ G+R+GK FQADVPDWSGP +D + G
Sbjct: 462 SSKTKTKGRISHERKWRVTV---------PFVIGIRIGKMFQADVPDWSGPTMSDTSFVG 512
Query: 182 EPLEMDPTKCGNLYEWNTNKSTTLGSIGNWLQCREVLDDNSEEGTICGKWRRAPLFEVQT 241
EPLE+ ++ + + N ++ NWLQCRE D N G ICGKWRRAP EVQT
Sbjct: 513 EPLEIGQSEYMHDLKKAKNSKKQCSAV-NWLQCREE-DTN---GVICGKWRRAPRSEVQT 567
Query: 242 DDWDCSCALVWDPIHADCAVPQELETDQVLKHLKYIETLRLRLVAKKRK 290
DW+C C WDP ADCAVPQELET ++LK LKYI+ LR R AKKRK
Sbjct: 568 KDWECFCCFSWDPSRADCAVPQELETSEILKQLKYIKMLRPRSDAKKRK 616
>AT2G19260.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr2:8357331-8359931 FORWARD LENGTH=631 | 201606
Length = 631
Score = 187 bits (476), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 133/229 (58%), Gaps = 26/229 (11%)
Query: 66 RTCGHLDNP---LKMLICDHCEDAFHVTCCNPRIKTIP-VDEWYCQPCSKKKCVLSSESN 121
R C H D P KMLICD CE+A+H CC ++K + +DEW C C K +
Sbjct: 410 RQCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLK--------NQ 461
Query: 122 SEKGGAKKYRSGKSKEKLNPISFMLKDNEPYTTGVRMGKAFQADVPDWSGPISNDINCFG 181
S K K S + K ++ P+ G+R+GK FQADVPDWSGP +D + G
Sbjct: 462 SSKTKTKGRISHERKWRVTV---------PFVIGIRIGKMFQADVPDWSGPTMSDTSFVG 512
Query: 182 EPLEMDPTKCGNLYEWNTNKSTTLGSIGNWLQCREVLDDNSEEGTICGKWRRAPLFEVQT 241
EPLE+ ++ + + N ++ NWLQCRE D N G ICGKWRRAP EVQT
Sbjct: 513 EPLEIGQSEYMHDLKKAKNSKKQCSAV-NWLQCREE-DTN---GVICGKWRRAPRSEVQT 567
Query: 242 DDWDCSCALVWDPIHADCAVPQELETDQVLKHLKYIETLRLRLVAKKRK 290
DW+C C WDP ADCAVPQELET ++LK LKYI+ LR R AKKRK
Sbjct: 568 KDWECFCCFSWDPSRADCAVPQELETSEILKQLKYIKMLRPRSDAKKRK 616
>AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein |
Chr1:29020444-29022938 REVERSE LENGTH=522 | 201606
Length = 522
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 65 CRTCGHLDNPLKMLICDHCEDAFHVTCCNPRIKTIPVDEWYCQPCSKK 112
C+ CG L CDHCED +HV+C P K +P WYC C+ K
Sbjct: 243 CKLCGEKAEARDCLACDHCEDMYHVSCAQPGGKGMPTHSWYCLDCTSK 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 65 CRTCGHLDNPLKMLICDHCEDAFHVTCCNPRIKTIPVDEWYCQPCSKKKCVLSSESNSEK 124
CR C + K+++CD C+DA+H+ C P +++P EW+C C K + + K
Sbjct: 405 CRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESVPNGEWFCTAC---KAAILKVQKARK 461
Query: 125 GGAKKYRSGKSKEKLNPISFMLK 147
KK + + ++ + P + K
Sbjct: 462 AFEKKMETVQKQKGIKPKNLQGK 484
>AT5G24330.1 | TRITHORAX-RELATED PROTEIN 6 | Chr5:8295245-8296997
REVERSE LENGTH=349 | 201606
Length = 349
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 65 CRTCGHLDNPLKMLICDHCEDAFHVTCCNPRIKTIPVDEWYCQPCSKKK 113
C C P K+L+CD C+ FH+ C P + ++P W+C CSK +
Sbjct: 35 CEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSKHQ 83
>AT1G63490.2 | transcription factor jumonji (jmjC) domain-containing
protein | Chr1:23544938-23552984 REVERSE LENGTH=1461 |
201606
Length = 1461
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 63 QSCRTCGHLDNPLKMLICDHCEDAFHVTCCNPRIKTIPVDEWYCQPC 109
Q+C C + ML+CD C +H+ C +P +K IP+ WYC C
Sbjct: 240 QACEQCKSDKHGEVMLLCDSCNKGWHIYCLSPPLKHIPLGNWYCLEC 286