BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1410.1
(338 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 86 3e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 80 1e-16
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 75 2e-14
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 70 3e-13
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 69 6e-13
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 44/335 (13%)
Query: 32 LWTIPAIPRIKLFLWKICNSALPVREKI-GKYININTSCPNCN-STESIDHALLHCALAK 89
+W +P +P++K FLW+ + AL E++ + + I+ SCP C+ ESI+HAL C A
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221
Query: 90 NIW-----------FHYNIISENINSITEWIFSWETHPDRCQTEENIHFSTILWI---IW 135
W N ENI++I ++ + T + H +W+ IW
Sbjct: 222 MAWRLSDSSLIRNQLMSNDFEENISNILNFV--------QDTTMSDFHKLLPVWLIWRIW 273
Query: 136 KTRCDHCFQHEINEIQKII--KMIDNFPKMSKKQSKQKQTP---------KDSWKPPTNG 184
K R + F K + + ++ QS K+TP K W+ P
Sbjct: 274 KARNNVVFNKFRESPSKTVLSAKAETHDWLNATQS-HKKTPSPTRQIAENKIEWRNPPAT 332
Query: 185 YIKINVDASF-TNLASSVGISMIAHDDNAKFIQAQVQTTRGRNSEECEAKAILLGLEWAK 243
Y+K N DA F + G +I + ++ N E E KA+L L+
Sbjct: 333 YVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTW 392
Query: 244 SQKQNSIIIESDNFNLIKHLCNNRHTVQWQSLM--HIRKIREREKEFDEVQFHYTQRTAN 301
+ + +E D LI +L N + + S + H+ I +F +QF + +R N
Sbjct: 393 IRGYTQVFMEGDCQTLI-NLING---ISFHSSLANHLEDISFWANKFASIQFGFIRRKGN 448
Query: 302 SVADKLAKWARKRKRSKVWDNILCILIDRY-CNNA 335
+A LAK+ L I +DRY CN++
Sbjct: 449 KLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCNDS 483
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 31/304 (10%)
Query: 32 LWTIPAIPRIKLFLWKICNSALPVREKIG-KYININTSCPN-CNSTESIDHALLHCALAK 89
+W + P+IK FLWK+ + AL + + ++I + C C E+ H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 90 NIWFHYNIISENINSITEWIFSWETHPD----RCQTEENIHFST----ILWIIWKTRCDH 141
+W I + + + + ET + C ILW +WK+R
Sbjct: 78 QVWRASGIPHQELRTTG---ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQL 134
Query: 142 CFQHEI----NEIQKIIKMIDNFP-----------KMSKKQSKQKQTPKDSWKPPTNGYI 186
FQ + N +Q+ + + ++ + +Q + W+ P + +I
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWI 194
Query: 187 KINVDASFTNLASSVGISMIAHDDNAKFI-QAQVQTTRGRNSEECEAKAILLGLEWAKSQ 245
K N D +F + + + D+N ++ Q + +S E E +A+++ ++ A SQ
Sbjct: 195 KYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQ 254
Query: 246 KQNSIIIESDNFNLIKHLCNNRHTVQWQSLMHIRKIREREKEFDEVQFHYTQRTANSVAD 305
+I E D+ ++ L NN + + IR+ R +K F+E F + RT N AD
Sbjct: 255 GYRKVIFEGDS-KQVEELMNNE-KLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPAD 312
Query: 306 KLAK 309
LAK
Sbjct: 313 ILAK 316
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 149/311 (47%), Gaps = 26/311 (8%)
Query: 20 ISQNSASRNWKFLWTIPAIPRIKLFLWKICNSALPVREKIG-KYININTSCPNCNS-TES 77
+S+ S + ++ +W P+I+ FLWK +++LPV + ++++ ++C C S E+
Sbjct: 245 VSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKET 304
Query: 78 IDHALLHCALAKNIWFHYNII-------SENINSITEWIFSWETHPDRCQTEENIHFSTI 130
++H L C A+ W +I +++I W+F+ + + + +
Sbjct: 305 VNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL-VPWL 363
Query: 131 LWIIWKTRCDHCFQHEINEIQKIIKMIDN------FPKMSKKQSKQKQTPKDS---WKPP 181
LW +WK R + F+ Q++++ ++ ++ + Q + S W+PP
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423
Query: 182 TNGYIKINVDASFTNLASSVGISMIAHDDNA--KFIQAQVQTTRGRNSEECEAKAILLGL 239
+ ++K N DA++ GI + ++ K++ A+ + ++ E E +A+ +
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAMRWAV 482
Query: 240 EWAKSQKQNSIIIESDNFNLIKHLCNNRHTVQWQSLMH-IRKIREREKEFDEVQFHYTQR 298
+ N +I ESD+ LI+ L N+ W SL I+ ++ +F EV+F + R
Sbjct: 483 LSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPR 539
Query: 299 TANSVADKLAK 309
N++A+++A+
Sbjct: 540 EGNTLAERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 44/300 (14%)
Query: 38 IPRIKLFLWKICNSALPVREK-IGKYININTSCPNCNSTESIDHALLHCALAKNIW---- 92
+P+IKLFLWK ALPV + + ++I+ C C + E+ H L HC A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 93 ---FHYNI---ISENINSITEWIFSWETHPDRCQTEENIHFSTIL----WIIWKTRCDHC 142
H I I E +N + + I IH +T+ W IWK R
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTI---------VLPPVGIHTATLFPWICWHIWKARNQLI 111
Query: 143 FQHE-INEIQKIIKMIDNFPKMSKKQSKQKQTPKDSWKPP--------TNGYIKINVDAS 193
FQ+ + I+ + K + + QS Q PK P T+ ++ VDA+
Sbjct: 112 FQNSHFSVIETVTKAVQD---ALAWQSAQLALPKVRVATPRPNSTTTLTHDFL-CYVDAA 167
Query: 194 F---TNLASSVGISMIAHDDNAKFIQAQVQTTRGRNSEECEAKAILLGLEWAKSQKQNSI 250
+ ++LA S + + R + EA AI + A +++ +
Sbjct: 168 WQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDL 227
Query: 251 IIESDNFNLIKHLCNNRHTVQ-WQSLMHIRKIREREKEFDEVQFHYTQRTANSVADKLAK 309
++ SD+ +++ L +N + + L+ IR IR R F + F + R NS+AD AK
Sbjct: 228 LVLSDSKSIVDALNSNVSLNEIFGLLVEIRSIRNR---FRSISFQFIPRLVNSIADAAAK 284
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 117/262 (44%), Gaps = 23/262 (8%)
Query: 67 TSCPNC-NSTESIDHALLHCALAKNIW-------FHYNIISENINSITEWIFSWETHPDR 118
SC C +S E+++H L C A+ +W + ++++ + W+ + E +
Sbjct: 10 ASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPK 69
Query: 119 CQTEENIHFSTILWIIWKTRCDHCFQH-EINEIQKIIKMIDNFPKMSKKQSKQKQTPKDS 177
N+ +LW +WK+R + F+ E + + + + +++F + S ++ + +
Sbjct: 70 LGKIGNL-VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 178 --------WKPPTNGYIKINVDASFTNLASSVGISMIAHDDNAKFIQAQVQT-TRGRNSE 228
WK P ++K N DA++ GI I +++ + + R +N
Sbjct: 129 VERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVL 188
Query: 229 ECEAKAILLGLEWAKSQKQNSIIIESDNFNLIKHLCNNRHTVQWQSLMH-IRKIREREKE 287
E E +A+ + II ESD L+ L ++ W +L + I++
Sbjct: 189 EAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDF---WPTLQPALEDIQQLLHH 245
Query: 288 FDEVQFHYTQRTANSVADKLAK 309
F+EV+F +T R N VAD++A+
Sbjct: 246 FEEVKFEFTPRGGNKVADRIAR 267