BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1450.1
(781 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 130 4e-31
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 89 1e-18
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 74 2e-13
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 3e-13
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 60 4e-09
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 168/376 (44%), Gaps = 22/376 (5%)
Query: 140 DKIKDIITNMGLTDLGCQGQPYTWSNKQYGDNLIQERLDRALVNYSWLSQFPTSTITHLE 199
++ ++ + + L D+ +G YTWSN Q DN I +LDRA+ N W S FP S I E
Sbjct: 250 EEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DDNPIIRKLDRAIANGDWFSSFP-SAIAVFE 307
Query: 200 AVG-SDHLPIFLTNKDHSQSKPKPFKFIRTWMNHPDCFNFIEDNWK-IIKQTSIPNNIQW 257
G SDH P + ++ + K F++ HP + W+ I S ++
Sbjct: 308 LSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGE 367
Query: 258 DLKKLSIKLTYWNKQVYGNIENNITKVTNRIQKCNS-----------REEHTRLQSDLED 306
LK N+Q +GNI++ + + ++ S R EH +
Sbjct: 368 HLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHV-ARKKWNF 426
Query: 307 LYLQQESIWKEKARNNFISLGDKNTKYFHSQAMQRNRNNMISAIRDSTGEWKEDIQEIQD 366
ES +++K+R ++ GD NT++FH + N+I +R E++ ++++
Sbjct: 427 FAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKE 486
Query: 367 I---FSSHLLNISTTTHPKEDPATNRLFSPSITLNQNIS--LVAVPSRVEIDWAINSLKK 421
+ + +HLL + + + P N ++ L A+PS EI A+ ++ +
Sbjct: 487 MIVAYYTHLLGSDSDILTPDSVQRIKDIHP-FRCNDTLASRLSALPSDKEITAAVFAMPR 545
Query: 422 EAAPGPDGYPPYFFQSDWDTINEDIYTLVRNFFTSACLPPGINLTHICLIPKTTTPQTPA 481
APGPD + FF W + + V+ FF + L N T I LIPK T +
Sbjct: 546 NKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLS 605
Query: 482 DFRPISLLNTTYKIIT 497
FRP+S YKIIT
Sbjct: 606 MFRPVSCCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 500 LAERFKTTLNHIISPFQAAYVPGRQITDNIIMGQELIHSYRKMKGETGYFGLKLDMSKAF 559
+ ER K + ++I P QA+++PGR TDNI+ QE +HS R+ KG G+ LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 560 DRIEWKYLFDIMKRLGYSEHWIKMIHECIATSSLAVLINGRPGNPFSPSR-----GIRQG 614
DRI W YL D + G+ E W+ I + GR P G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 615 DPLSPFLF-ALAMEGLSRKLMDTSNQARFVGFPTNHVDM 652
D +PF ++A L R++ R G P+ +D+
Sbjct: 121 DMAAPFTSNSVACAELLREI------GRGSGIPSMPLDL 153
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 99 WKTLINLQDNSDL---PRIVIGDLNCILDPKDKCGGATGSNSYTDKIKDIITNM---GLT 152
W + L +S L P +V+GD N I + SN ++D+ M L
Sbjct: 105 WDDITRLSASSPLCNSPWLVVGDFNQIASVTEH-YSLMPSNISLQGLEDLQACMRDSDLV 163
Query: 153 DLGCQGQPYTWSNKQYGDNLIQERLDRALVNYSWLSQFPTSTITHLEAVGSDHLP-IFLT 211
DL C+G YTWSN Q DN I +LDRA+VN WL+ FPT++ SDH + +
Sbjct: 164 DLPCRGVLYTWSNHQQ-DNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMVIL 222
Query: 212 NKDHSQSKPKPFKFIRTWMNHPDCFNFIEDNW-KIIKQTSIPNNIQWDLKKLSIKLTYWN 270
N SK K FK+ HPD + I W K I S ++ LK+ N
Sbjct: 223 NNSPPLSKKKSFKYFSFLSTHPDFISSILAAWQKEIAVGSFMFSLGELLKEAKKACRGLN 282
Query: 271 KQVYGNIENNITKVTNRIQKCNSREEHTRLQSDLEDLYLQQESIWKEKARNNFISLGD 328
++ + NI+ + + R EH + + ES +K+K+R ++ GD
Sbjct: 283 RRGFSNIQAQLMSNPSDFL---FRAEHV-ARKNWNFFAAALESFYKQKSRIKWLKEGD 336
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 67.4 bits (163), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 41/70 (58%)
Query: 593 LAVLINGRPGNPFSPSRGIRQGDPLSPFLFALAMEGLSRKLMDTSNQARFVGFPTNHVDM 652
L +ING P +PSRG+RQGDPLSP+LF L E LS Q R G ++
Sbjct: 10 LLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSP 69
Query: 653 EISHLLFADD 662
I+HLLFADD
Sbjct: 70 RINHLLFADD 79
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 652 MEISHLLFADDCIIFGRNSLDNVHNLKNILQEFSDSSGQMINYTKSNIFYSKNSHPKFKR 711
M I+HL FADD ++F ++ + I +F+D SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 712 MIMRTLKVIYASTSVKYLGSQLFIGAQKTKVFKDLLDQIQNKLNKWNHSFLSQAGRTVVL 771
I+ + + V+YLG L T + L+++I+ ++ KW LS AGR ++
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 772 TAIAAAVPRY 781
+++ ++ +
Sbjct: 125 SSVIHSLTNF 134