BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1510.1
(968 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 124 4e-29
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 76 3e-14
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 55 2e-07
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 55 3e-07
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 55 3e-07
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 179/407 (43%), Gaps = 55/407 (13%)
Query: 122 LCIGDMNAIGSHREKWGG-SSQTPF--INQFASFINNSGLIDLGFNGPAFTWSNNKNLHH 178
+ +GD + I + + + + P + +F + + +S L+D+ G +TWSN+++ +
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNP 281
Query: 179 LTRERLDRVLADATWLDHFQNA-GVFHLPRYNSDHCPILLKTE----------------- 220
+ R +LDR +A+ W F +A VF L SDH P ++ E
Sbjct: 282 IIR-KLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFLS 339
Query: 221 ------VHNSIGPKQ---------NFTDKLNQVKTNLNHWSKQTFGKLDRRLKVLRSQLI 265
V ++ ++ + + L K ++Q FG + + K L
Sbjct: 340 THPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLE 399
Query: 266 TIQHHV---PNQMNLNREAIIQEE----IMQLEEFQRTKMEQRTRQNWALNGDRNTKAFH 318
+IQ + P+ E + +++ LE F R Q++R W +GD NT+ FH
Sbjct: 400 SIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYR----QKSRIKWLQDGDANTRFFH 455
Query: 319 TSVAIRRKNNHIQSLVTTEGTQIKEEGHIAEHLVDHFQNLFKAEPVAPAPPDI-----LH 373
+ + N I+ L + +++ + E +V ++ +L ++ P + +H
Sbjct: 456 KVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIH 515
Query: 374 NYKAIPKIHQRALSCIPTEEEIREVVFHMGPIKSPGPDGYPCIFYQNGWDTIKQDLISHL 433
++ + R LS +P+++EI VF M K+PGPD + F+ W +K I+ +
Sbjct: 516 PFRCNDTLASR-LSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAV 574
Query: 434 QQIFTQGFFEPTLNQTNLVLIPKSEHPKMASDFRPIALCNTLYKFIT 480
++ F G N T + LIPK S FRP++ C +YK IT
Sbjct: 575 KEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 483 LANRLRPLLEGRINWQQSAFVPRRQIIDNIVVVQESFHSMSLTKSRKGAFALKMDMAKAY 542
+ RL+PL+ I Q++F+P R DNIV VQE+ HSM K KG LK+D+ KAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 543 DRINWDFLKQVLLPIG 558
DRI WD+L+ L+ G
Sbjct: 61 DRIRWDYLEDTLISAG 76
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 829 WIPPPHNLLKLNFDGAFTH---YGASISVIVKNSNGIKISEKVRIIEAESGLESEVKALL 885
W PPP +K NFD +T Y S I + + I + ++ + L +E L
Sbjct: 206 WNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFL 265
Query: 886 LAVEVGNELGLDELLIEGDCKCLIDNVMDGQDSIGWRLKPYVLEARNELLQDPLWALMFC 945
A++V GL + E D K L+ + +G+D L + + R+ +L+ P +L F
Sbjct: 266 HALQVIWAHGLRYVWFESDSKSLVTLINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFV 323
Query: 946 YREANIEAHSLAHSV 960
RE N A +LA V
Sbjct: 324 NRERNSAADALASHV 338
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 785 KGRNDFHFNNHQPNLSFILNQAKTQAANFTNRSE----VPILNRR---NYI-WIPPPHNL 836
K RN+ FN + + S + AK + ++ N ++ P R+ N I W PP
Sbjct: 274 KARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATY 333
Query: 837 LKLNFDGAFT--HYGASISVIVKNSNGIKIS-EKVRIIEAESGLESEVKALLLAVEVGNE 893
+K NFD F A+ I++N G IS +++ + LE+E KALL A++
Sbjct: 334 VKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWI 393
Query: 894 LGLDELLIEGDCKCLIDNVMDG 915
G ++ +EGDC+ LI N+++G
Sbjct: 394 RGYTQVFMEGDCQTLI-NLING 414
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 102 DRLCFWSNLNTTLSSLS----SPYLCIGDMNAIGSHREKWG---GSSQTPFINQFASFIN 154
+R W ++ T LS+ S SP+L +GD N I S E + + + + +
Sbjct: 100 ERRSLWDDI-TRLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGLEDLQACMR 158
Query: 155 NSGLIDLGFNGPAFTWSNNKNLHHLTRERLDRVLADATWLDHFQNAGVFHLPRYNSDH-- 212
+S L+DL G +TWSN++ + + R +LDR + + WL F A P +SDH
Sbjct: 159 DSDLVDLPCRGVLYTWSNHQQDNPILR-KLDRAIVNGCWLATFPTASAIFDPPSDSDHAA 217
Query: 213 CPILL 217
C ++L
Sbjct: 218 CMVIL 222