BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1520.1
(361 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 68 4e-12
AT5G36228.1 | nucleic acid binding / zinc ion binding protein | ... 65 1e-11
AT3G31430.1 | zinc knuckle (CCHC-type) family protein | Chr3:127... 59 3e-09
AT5G18636.1 | Ta11-like non-LTR retrotransposon | Chr5:6211268-6... 55 5e-08
AT5G25200.1 | Ta11-like non-LTR retrotransposon | Chr5:8716766-8... 55 6e-08
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 10/208 (4%)
Query: 17 DDPAPVIAIASQE-ESVSINFRHCCMIKVLSHKQFTIDLITRKLRGGWNLPHPYNFKEVS 75
+D PVI I + E+++ ++ C ++KVL Q I ++ RKLR W ++
Sbjct: 57 EDEEPVITIGEEVLEAMNGLWKKCMIVKVLG-SQIPISVLNRKLRELWKPSGVMTVMDLP 115
Query: 76 RNLFLVQLSTTGEVDIVLDRAPWIIREDTFLMEKCTADKTVFDYEFDKAWFFIQLHGIPL 135
R F+++ E L PW + + L++ ++ + +++L IP
Sbjct: 116 RQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPY 175
Query: 136 FYLNAKTVNMLAKNMGRFNPVSDLEASKW--IDYPKIKVEMDITKPLPREVLLKIQGEQT 193
Y + + +A+ +GR V D+ + + ++ +E+++ KPL VL I G++
Sbjct: 176 NYYHRCLLMEIARGLGRPLKV-DMNTINFDKGRFARVCIEVNLAKPLKGTVL--INGDRY 232
Query: 194 YSVTLRFERLGRVCLFCGFLGHSLNFCP 221
+ + +E L ++C CG GH ++ CP
Sbjct: 233 F---VAYEGLSKICSSCGIYGHLVHSCP 257
>AT5G36228.1 | nucleic acid binding / zinc ion binding protein |
Chr5:14271691-14272776 FORWARD LENGTH=361 | 201606
Length = 361
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 82 QLSTTGEVDIV--LDRAPWIIREDTFLMEKCTADKTVFDYEFDKAWFFIQLHGIPLFYLN 139
Q+ E+D++ L RAPW+ E +++ T F W + + GIPL Y++
Sbjct: 79 QVRFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDFLTFIDVW--VHIRGIPLPYVS 136
Query: 140 AKTVNMLAKNMGRFNPVS-DLEASKWIDYPKIKVEMDITKPLPREVLLKIQGEQTYSVTL 198
+TV ++A +G + + E + I + ++KV MD T+PL ++ + +
Sbjct: 137 ERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGF 196
Query: 199 RFERLGRVCLFCGFLGHSLNFCP 221
+E+L RVC C + H ++ CP
Sbjct: 197 EYEKLQRVCTNCCRVNHQVSHCP 219
>AT3G31430.1 | zinc knuckle (CCHC-type) family protein |
Chr3:12795861-12796871 REVERSE LENGTH=336 | 201606
Length = 336
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 89 VDIVLDRAPWIIREDTFLMEKCTADKTVFDYEFDKAWFFIQLHGIPLFYLNAKTVNMLAK 148
++ VL R PW + L+++ +F + F++Q+ GIP +LN V + +
Sbjct: 183 LETVLRRGPWAFNDWMILLQRWEPQIPLFPF----IPFWVQIRGIPFQFLNRGVVEHIGR 238
Query: 149 NMGR-FNPVSDLEASKWIDYPKIKVEMDITKPLPREVLLKIQGEQTYSVTLRFERLGRVC 207
+G+ + ++E +D+ ++ + DIT PL + + + R+ERL C
Sbjct: 239 ALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFC 298
Query: 208 LFCGFLGHSLNFC 220
CG L H C
Sbjct: 299 EVCGMLTHDFGAC 311
>AT5G18636.1 | Ta11-like non-LTR retrotransposon |
Chr5:6211268-6212371 FORWARD LENGTH=367 | 201606
Length = 367
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 126 FFIQLHGIPLFYLNAKTVNMLAKNMGRFNPVSDLEA-SKWIDYPKIKVEMDITKPLPREV 184
++Q+ GIPL Y++ +TV +A+++G + EA S I + +++V IT L
Sbjct: 123 LWVQIRGIPLPYVSEETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQ 182
Query: 185 LLKIQGEQTYSVTLRFERLGRVCLFCGFLGHSLNFCPNRLRLLDI 229
+ +T ++ ++ERL R+C C H+ +CP R R L I
Sbjct: 183 RIIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQRSLSI 227
>AT5G25200.1 | Ta11-like non-LTR retrotransposon |
Chr5:8716766-8717869 REVERSE LENGTH=367 | 201606
Length = 367
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 126 FFIQLHGIPLFYLNAKTVNMLAKNMGRFNPVSDLEA-SKWIDYPKIKVEMDITKPLPREV 184
++Q+ GIPL Y++ +TV +A+++G + EA S I + +++V IT L
Sbjct: 123 LWVQIRGIPLPYVSEETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQ 182
Query: 185 LLKIQGEQTYSVTLRFERLGRVCLFCGFLGHSLNFCPNRLRLLDI 229
+ +T ++ ++ERL R+C C H+ +CP R R L I
Sbjct: 183 RIIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQRPLSI 227