BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1540.1
(213 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26420.1 | RNA-binding (RRM/RBD/RNP motifs) family protein wi... 225 2e-74
AT4G39260.3 | cold%2C circadian rhythm%2C and RNA binding 1 | Ch... 115 2e-33
AT2G21660.2 | cold%2C circadian rhythm%2C and rna binding 2 | Ch... 115 1e-32
AT4G39260.2 | cold%2C circadian rhythm%2C and RNA binding 1 | Ch... 114 1e-32
AT2G21660.1 | cold%2C circadian rhythm%2C and rna binding 2 | Ch... 115 2e-32
>AT3G26420.1 | RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain-containing protein |
Chr3:9671953-9673055 FORWARD LENGTH=245 | 201606
Length = 245
Score = 225 bits (573), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 167/254 (65%), Gaps = 53/254 (20%)
Query: 1 MSDPVEYRCFVGGLAWATSDRGLKNAFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDDKKA 60
MS+ EYRCF+GGLAW TSDRGL++AFEK+G+LVEAKVV+DKFSGRSRGFGF+TFD+KKA
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 61 MEEAIEAMNGLELDGRPITVDKAQPQQ-GSGRDRDGDRDHDRDRGRDRNRDYGGDRGSGG 119
M+EAI AMNG++LDGR ITVDKAQP Q G+GRD DGDR RDRG DR+R G
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDR--GRDRGYDRDR-----SRPSG 113
Query: 120 GGGGGDCFKCGKPGHFARECPSGDGGRGG---------------RYGGRDDRYG------ 158
G GGGDCFKCGKPGHFARECPS GG RYG +DDRYG
Sbjct: 114 GRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRY 173
Query: 159 ---------------------GGGGGGGSRYGPDRNGDRGSGRSRDGGGSRGGSGDQSSR 197
G GGGSRYGPDR+G+R GRSRD GGSRG G + R
Sbjct: 174 GAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRD-GGSRGAPGGE--R 230
Query: 198 SRSGPYERRSSGGF 211
PY+R +GGF
Sbjct: 231 HSRAPYDRPRAGGF 244
>AT4G39260.3 | cold%2C circadian rhythm%2C and RNA binding 1 |
Chr4:18274166-18274958 REVERSE LENGTH=92 | 201606
Length = 92
Score = 115 bits (289), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 68/82 (82%)
Query: 4 PVEYRCFVGGLAWATSDRGLKNAFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEE 63
VEYRCFVGGLAWAT+D L+ F +FG+++++K++ D+ SGRSRGFGFVTF D+KAM +
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 64 AIEAMNGLELDGRPITVDKAQP 85
AIE MNG ELDGR ITV++AQ
Sbjct: 63 AIEEMNGKELDGRVITVNEAQS 84
>AT2G21660.2 | cold%2C circadian rhythm%2C and rna binding 2 |
Chr2:9265477-9266316 REVERSE LENGTH=159 | 201606
Length = 159
Score = 115 bits (289), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 70/80 (87%)
Query: 5 VEYRCFVGGLAWATSDRGLKNAFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEA 64
VEYRCFVGGLAWAT DR L+ AF ++G+++++K++ D+ +GRSRGFGFVTF D+KAM++A
Sbjct: 6 VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 65 IEAMNGLELDGRPITVDKAQ 84
IE MNG +LDGR ITV++AQ
Sbjct: 66 IEGMNGQDLDGRSITVNEAQ 85
>AT4G39260.2 | cold%2C circadian rhythm%2C and RNA binding 1 |
Chr4:18274166-18274958 REVERSE LENGTH=126 | 201606
Length = 126
Score = 114 bits (286), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 68/81 (83%)
Query: 4 PVEYRCFVGGLAWATSDRGLKNAFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEE 63
VEYRCFVGGLAWAT+D L+ F +FG+++++K++ D+ SGRSRGFGFVTF D+KAM +
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 64 AIEAMNGLELDGRPITVDKAQ 84
AIE MNG ELDGR ITV++AQ
Sbjct: 63 AIEEMNGKELDGRVITVNEAQ 83
>AT2G21660.1 | cold%2C circadian rhythm%2C and rna binding 2 |
Chr2:9265477-9266316 REVERSE LENGTH=176 | 201606
Length = 176
Score = 115 bits (289), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 70/80 (87%)
Query: 5 VEYRCFVGGLAWATSDRGLKNAFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEA 64
VEYRCFVGGLAWAT DR L+ AF ++G+++++K++ D+ +GRSRGFGFVTF D+KAM++A
Sbjct: 6 VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 65 IEAMNGLELDGRPITVDKAQ 84
IE MNG +LDGR ITV++AQ
Sbjct: 66 IEGMNGQDLDGRSITVNEAQ 85