BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1550.1
(325 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 87 7e-20
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 55 4e-08
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 87.4 bits (215), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 37 NYLLWSQVVETFIDGRGKLGYINGRNIEPQIQDPIYDKWCIENAIVKGWLIGAMEPDVMN 96
NY+ W +F+ K G+I+G +P P+Y W NA+V WL+ +M ++
Sbjct: 41 NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLE 100
Query: 97 LFIRLPTAKAIWEAVSRTYFEGADRSVIYNLTRKSMQMRQTGKLVSTYFADLRAIWDELD 156
+ TA +WE + R + D IY L R+ +RQ G V YF L +W EL
Sbjct: 101 SVMYAETAHKMWEDLRRVFVPCVDLK-IYQLRRRLATLRQGGDSVEEYFGKLSKVWMELS 159
Query: 157 YRKPIQFTQPDV--------VLARQKEIGE-DRVYVFLAG--LDDVYDSVRSDILRTDPF 205
PI P+ R +E E ++ Y FL G L+ +++V + I+ P
Sbjct: 160 EYAPI----PECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPP 215
Query: 206 PNLDSAFAIVRGEE 219
P+L AFA+V+ E
Sbjct: 216 PSLHEAFAMVKDAE 229
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 31 VKLNGINYLLWSQVVETFIDGRGKLGYINGRNIEPQIQDPIYDKWCIENAIVKGWLIGAM 90
+ LN +NY +W ++ ET G LG+I+G + + + +W + +VK W+ G +
Sbjct: 26 LDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE---KRWKERDGLVKMWIYGTI 82
Query: 91 EPDVMNLFIRL-PTAKAIWEAVSRTYFEGAD-RSVIYNLTRKSMQMRQTGKLVSTYFADL 148
+++ I++ TA+ +W ++ + + + R++ + ++ + V Y L
Sbjct: 83 TDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLS--VHEYCQKL 140
Query: 149 RAIWDELDYRKPIQFTQPDVVLARQKEIGEDRVYV--FLAGLDDVYDSVRSDILRTDPFP 206
+++ D L T D ++ DRV V L GL + YD + + I PFP
Sbjct: 141 KSLSDLL--------TNVDSPIS-------DRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185
Query: 207 NLDSAFAIVRGEEQR 221
+ A +++ EE R
Sbjct: 186 SFTEARSMLLMEESR 200