BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1570.1
(690 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 454 e-147
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 454 e-147
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 194 5e-57
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 101 1e-24
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 65 1e-12
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 454 bits (1168), Expect = e-147, Method: Compositional matrix adjust.
Identities = 222/520 (42%), Positives = 333/520 (64%), Gaps = 8/520 (1%)
Query: 132 RSTRGKPP---DRYSPDNSKSMRYPIANYVSTDHLPTSVKAFVNQMSDIIIPTKVQDALE 188
R TR KP D Y + + I+ ++S + + +F+ ++ P+ +A E
Sbjct: 36 RRTR-KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKE 94
Query: 189 NPTWRKAMSEEMCALDRNETWDLVPLPEGKKPVDCKWIFTIKHKPDGTIDRYKARLVARD 248
W AM +E+ A++ TW++ LP KKP+ CKW++ IK+ DGTI+RYKARLVA+
Sbjct: 95 FLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKG 154
Query: 249 FTQTYGVDYQETFTPVAKINTVRVLLSLAANFNWPLQQYDVKNAFLHGDLHEEVYMSLPP 308
+TQ G+D+ ETF+PV K+ +V+++L+++A +N+ L Q D+ NAFL+GDL EE+YM LPP
Sbjct: 155 YTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPP 214
Query: 309 GYNSTED----ANLVCKLKKALYGLKQSPRAWFGRFRLAMKKYGYVQSNADHTLFLKRQD 364
GY + + N VC LKK++YGLKQ+ R WF +F + + +G+VQS++DHT FLK
Sbjct: 215 GYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA 274
Query: 365 GRLTALIIYVDDMIVTGDDYEEIGKLKDYLSSEFDMKDLGGLKYFLGIEVTRSKWGLFLS 424
+++YVDD+I+ ++ + +LK L S F ++DLG LKYFLG+E+ RS G+ +
Sbjct: 275 TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINIC 334
Query: 425 QRKYVLDLLKETGMLDCQPISTPMEQNHGMEELPDQVPADKGKYQRLVGRLIYLSHTRPD 484
QRKY LDLL ETG+L C+P S PM+ + D Y+RL+GRL+YL TR D
Sbjct: 335 QRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLD 394
Query: 485 IAYAVSVVSRFMHNPSEVHMEAVVRIVRYLKSAPGKGLMFSNHGHANIIGYTDSDWGGKG 544
I++AV+ +S+F P H +AV++I+ Y+K G+GL +S+ + ++D+ +
Sbjct: 395 ISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCK 454
Query: 545 EKRRSTSGYFTFVGGNLVTWKSKKQKVVSMSSAEAEYRAMTKGICEMLWLKILMGELGFP 604
+ RRST+GY F+G +L++WKSKKQ+VVS SSAEAEYRA++ EM+WL EL P
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514
Query: 605 PDKAMQLYCDNQAAANIAENPVQHDRTKHVEIDRNFIYEK 644
K L+CDN AA +IA N V H+RTKH+E D + + E+
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 454 bits (1168), Expect = e-147, Method: Compositional matrix adjust.
Identities = 222/520 (42%), Positives = 333/520 (64%), Gaps = 8/520 (1%)
Query: 132 RSTRGKPP---DRYSPDNSKSMRYPIANYVSTDHLPTSVKAFVNQMSDIIIPTKVQDALE 188
R TR KP D Y + + I+ ++S + + +F+ ++ P+ +A E
Sbjct: 36 RRTR-KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKE 94
Query: 189 NPTWRKAMSEEMCALDRNETWDLVPLPEGKKPVDCKWIFTIKHKPDGTIDRYKARLVARD 248
W AM +E+ A++ TW++ LP KKP+ CKW++ IK+ DGTI+RYKARLVA+
Sbjct: 95 FLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKG 154
Query: 249 FTQTYGVDYQETFTPVAKINTVRVLLSLAANFNWPLQQYDVKNAFLHGDLHEEVYMSLPP 308
+TQ G+D+ ETF+PV K+ +V+++L+++A +N+ L Q D+ NAFL+GDL EE+YM LPP
Sbjct: 155 YTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPP 214
Query: 309 GYNSTED----ANLVCKLKKALYGLKQSPRAWFGRFRLAMKKYGYVQSNADHTLFLKRQD 364
GY + + N VC LKK++YGLKQ+ R WF +F + + +G+VQS++DHT FLK
Sbjct: 215 GYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA 274
Query: 365 GRLTALIIYVDDMIVTGDDYEEIGKLKDYLSSEFDMKDLGGLKYFLGIEVTRSKWGLFLS 424
+++YVDD+I+ ++ + +LK L S F ++DLG LKYFLG+E+ RS G+ +
Sbjct: 275 TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINIC 334
Query: 425 QRKYVLDLLKETGMLDCQPISTPMEQNHGMEELPDQVPADKGKYQRLVGRLIYLSHTRPD 484
QRKY LDLL ETG+L C+P S PM+ + D Y+RL+GRL+YL TR D
Sbjct: 335 QRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLD 394
Query: 485 IAYAVSVVSRFMHNPSEVHMEAVVRIVRYLKSAPGKGLMFSNHGHANIIGYTDSDWGGKG 544
I++AV+ +S+F P H +AV++I+ Y+K G+GL +S+ + ++D+ +
Sbjct: 395 ISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCK 454
Query: 545 EKRRSTSGYFTFVGGNLVTWKSKKQKVVSMSSAEAEYRAMTKGICEMLWLKILMGELGFP 604
+ RRST+GY F+G +L++WKSKKQ+VVS SSAEAEYRA++ EM+WL EL P
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514
Query: 605 PDKAMQLYCDNQAAANIAENPVQHDRTKHVEIDRNFIYEK 644
K L+CDN AA +IA N V H+RTKH+E D + + E+
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 194 bits (492), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 135/224 (60%), Gaps = 1/224 (0%)
Query: 370 LIIYVDDMIVTGDDYEEIGKLKDYLSSEFDMKDLGGLKYFLGIEVTRSKWGLFLSQRKYV 429
L++YVDD+++TG + L LSS F MKDLG + YFLGI++ GLFLSQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 430 LDLLKETGMLDCQPISTPMEQNHGMEELPDQVPADKGKYQRLVGRLIYLSHTRPDIAYAV 489
+L GMLDC+P+STP+ + P D ++ +VG L YL+ TRPDI+YAV
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 490 SVVSRFMHNPSEVHMEAVVRIVRYLKSAPGKGLMFSNHGHANIIGYTDSDWGGKGEKRRS 549
++V + MH P+ + + R++RY+K GL + N+ + DSDW G RRS
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 550 TSGYFTFVGGNLVTWKSKKQKVVSMSSAEAEYRAMTKGICEMLW 593
T+G+ TF+G N+++W +K+Q VS SS E EYRA+ E+ W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 101 bits (252), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 180 PTKVQDALENPTWRKAMSEEMCALDRNETWDLVPLPEGKKPVDCKWIFTIKHKPDGTIDR 239
P V AL++P W +AM EE+ AL RN+TW LVP P + + CKW+F K DGT+DR
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 240 YKARLVARDFTQTYGVDYQETFTPVAKINTVRVLLSLAANF------NWPLQQY 287
KARLVA+ F Q G+ + ET++PV + T+R +L++A NW + +
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEVGQSINWMFKMH 141
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 65.5 bits (158), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 476 IYLSHTRPDIAYAVSVVSRFMHNPSEVHMEAVVRIVRYLKSAPGKGLMFSNHGHANIIGY 535
+YL+ TRPD+ +AV+ +S+F M+AV +++ Y+K G+GL +S + +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 536 TDSDWGGKGEKRRSTSGYFTFV 557
DSDW + RRS +G+ + V
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82