BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1640.1
(491 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 65 6e-11
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 65 6e-11
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 60 3e-10
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 395 REPQNIEECRHRKDWPMWKDAIQTELNSLAKREVFGPVYPTPENIKPVGYKWVFVRKRNE 454
+EP E K++ +W A+ E+ ++ + + P N KP+G KWV+ K N
Sbjct: 84 KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNS 139
Query: 455 TDEIVRYKARLVAQVFSQRPGIDFQGTYSPV 485
I RYKARLVA+ ++Q+ GIDF T+SPV
Sbjct: 140 DGTIERYKARLVAKGYTQQEGIDFIETFSPV 170
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 395 REPQNIEECRHRKDWPMWKDAIQTELNSLAKREVFGPVYPTPENIKPVGYKWVFVRKRNE 454
+EP E K++ +W A+ E+ ++ + + P N KP+G KWV+ K N
Sbjct: 84 KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNS 139
Query: 455 TDEIVRYKARLVAQVFSQRPGIDFQGTYSPV 485
I RYKARLVA+ ++Q+ GIDF T+SPV
Sbjct: 140 DGTIERYKARLVAKGYTQQEGIDFIETFSPV 170
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 410 PMWKDAIQTELNSLAKREVFGPVYPTPENIKPVGYKWVFVRKRNETDEIVRYKARLVAQV 469
P W A+Q EL++L++ + + V P P N +G KWVF K + + R KARLVA+
Sbjct: 38 PGWCQAMQEELDALSRNKTWILV-PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG 96
Query: 470 FSQRPGIDFQGTYSPVMDAIT 490
F Q GI F TYSPV+ T
Sbjct: 97 FHQEEGIYFVETYSPVVRTAT 117