BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1830.1
(249 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 57 3e-09
AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 1e-08
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 30/237 (12%)
Query: 13 VYHIWIERNASFFQNKANTVSGIINMIVDEVKIKASSGKCRIERSIQNREFAEKWNLGIQ 72
++ +W RN FQ K+ + + ++V+ + + + N +
Sbjct: 124 LWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNT-----------YVQSLNQQVH 172
Query: 73 LIR---PAVKGYRWSPSPLGCILISSDGSLDSES--AGFGAILRDSDGNPIALGAG---A 124
R P + +W P I + DG+ + ++ A G ++RD +G + +G+G
Sbjct: 173 SSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENG--VYMGSGQAIG 230
Query: 125 SSMVSILHHELQGVHLGFTLALKHHCSKVVIATDSMVVSSLLADRQPLPHLDV-WFIWVQ 183
S+ L E Q + + A KV+ DS V L+ + + L+ F W++
Sbjct: 231 STTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK----LNFGRFNWIR 286
Query: 184 IQKLWGC-FQQCTVHHVFRELNQAADLLAK--LRPPGVVEFEAAYLPAGLSQIIKYD 237
+ W F++ V R NQ AD+LAK L+P +F Y+PA ++ + YD
Sbjct: 287 EGRFWQKRFEEAVFKWVPRTNNQPADILAKHHLQPNQSFKFH-YYVPAFITSTLYYD 342
>AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:19071537-19072019 FORWARD
LENGTH=160 | 201606
Length = 160
Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 83 WSPSPLGCILISSDGSLDSE-SAGFGAILRDSDGNPIALGAGASSMVS-ILHHELQGVHL 140
W+ P G + DGS + E + G I+RD G ++ G + S L E Q + +
Sbjct: 3 WTRPPHGWKKCNYDGSYNREMPSKAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLI 62
Query: 141 GFTLALKHHCSKVVIATDSMVVSSLLADRQPLPHLDVWFIWVQIQKLWGC-FQQCTVHHV 199
H K+ D+ V +L R+ D+ F W++ + W FQ+C +
Sbjct: 63 TMQSCWSHGHRKIWFEGDNREVMEILNRRKS--RFDI-FNWIRDVQAWKQRFQECRFTWI 119
Query: 200 FRELNQAADLLAKLRPPGVVEFE-AAYLPAGLSQIIKYD 237
R+ N+ AD+LAK P +F+ Y+P +S ++ +
Sbjct: 120 NRKQNKPADILAKSHLPQNEQFKFYDYIPIVISSALQLE 158