BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1910.1
(790 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 138 3e-33
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 138 3e-33
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 107 9e-27
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 47 6e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 635 DEIAHPPSRYPHR-VRKSTQLPDYV-----------------YSTFSPSFTSFLASIHCH 676
+++ P HR RK L DY Y SP + SFL I
Sbjct: 24 NDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKA 83
Query: 677 SEPPSYKEAVVDPLWQKAMDEELSALHKTDTWALVPLPCSKRIIGSRWVYKIKTKSDGSI 736
EP +Y EA +W AMD+E+ A+ T TW + LP +K+ IG +WVYKIK SDG+I
Sbjct: 84 KEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
Query: 737 ERYKARLVAKGFSQEYGMDYEETFAPVAKMTIVRMLIAVASFRQWHISQMDVKN 790
ERYKARLVAKG++Q+ G+D+ ETF+PV K+T V++++A+++ + + Q+D+ N
Sbjct: 144 ERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 635 DEIAHPPSRYPHR-VRKSTQLPDYV-----------------YSTFSPSFTSFLASIHCH 676
+++ P HR RK L DY Y SP + SFL I
Sbjct: 24 NDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKA 83
Query: 677 SEPPSYKEAVVDPLWQKAMDEELSALHKTDTWALVPLPCSKRIIGSRWVYKIKTKSDGSI 736
EP +Y EA +W AMD+E+ A+ T TW + LP +K+ IG +WVYKIK SDG+I
Sbjct: 84 KEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
Query: 737 ERYKARLVAKGFSQEYGMDYEETFAPVAKMTIVRMLIAVASFRQWHISQMDVKN 790
ERYKARLVAKG++Q+ G+D+ ETF+PV K+T V++++A+++ + + Q+D+ N
Sbjct: 144 ERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 107 bits (268), Expect = 9e-27, Method: Composition-based stats.
Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Query: 678 EPPSYKEAVVDPLWQKAMDEELSALHKTDTWALVPLPCSKRIIGSRWVYKIKTKSDGSIE 737
EP S A+ DP W +AM EEL AL + TW LVP P ++ I+G +WV+K K SDG+++
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 738 RYKARLVAKGFSQEYGMDYEETFAPVAKMTIVRMLIAVASFRQWHISQ 785
R KARLVAKGF QE G+ + ET++PV + +R ++ VA +Q + Q
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA--QQLEVGQ 132
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 375 LWHSRLGHVSPSRLKYLVSTSALGDLKVKNISDCSGYKLAKFSALPFTRSLTISAKPFDL 434
LWHSRL H+S ++ LV L KV ++ C K + F+ + P D
Sbjct: 71 LWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDY 130
Query: 435 FRSDVWGPFSVP 446
SD+WG SVP
Sbjct: 131 VHSDLWGAPSVP 142