BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g2000.1
         (142 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485...    53   8e-09
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485...    53   8e-09

>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
           Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
          Length = 1043

 Score = 53.1 bits (126), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 37  YASAIGSIMYAMICTRPDVSCALSMCSRYQSNPVETHWTATKNFLKYSRRTKDHFVVYGG 96
           Y   IG +MY  I TR D+S A++  S++   P   H  A    L Y + T    + Y  
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436

Query: 97  EETLKVVGHVDASFQRDRDDFRSQSAYVFCLNGGAVSWK 135
           +  +++    DASFQ  +D  RS + Y   L    +SWK
Sbjct: 437 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWK 475


>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
           Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
          Length = 1043

 Score = 53.1 bits (126), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 37  YASAIGSIMYAMICTRPDVSCALSMCSRYQSNPVETHWTATKNFLKYSRRTKDHFVVYGG 96
           Y   IG +MY  I TR D+S A++  S++   P   H  A    L Y + T    + Y  
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436

Query: 97  EETLKVVGHVDASFQRDRDDFRSQSAYVFCLNGGAVSWK 135
           +  +++    DASFQ  +D  RS + Y   L    +SWK
Sbjct: 437 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWK 475


Top