BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g2200.1
(645 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 137 5e-34
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 108 6e-26
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 92 5e-20
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 90 1e-18
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 87 6e-18
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 183/392 (46%), Gaps = 39/392 (9%)
Query: 262 NTIIKVSQLI--TNGKWNLNVINMYFNNDICSAILSINLNTND-EDKAIWTLTKSGNFSL 318
++I+KVS LI + +W +VI M F I + D W T SG++++
Sbjct: 166 SSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTV 225
Query: 319 KSMYNFL------RNNTLYTTQDQMDWFF--IWNMNTIPRIILFLWKCCTNSLPVKAKIG 370
KS Y L R++ ++ ++ + IW T P+I FLWKC +NSLPV +
Sbjct: 226 KSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALA 285
Query: 371 -KFIGNNYSCVNCNE-EETIDHVMLHCSFAKAIWFHFQVR-------TDHITTTIQWI-- 419
+ + +C+ C +ET++H++ C+FA+ W + D I + W+
Sbjct: 286 YRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFN 345
Query: 420 -----QQWKPLEEETINLYAKILWFLWKARCENCFMTNKQNPLQMIERITNTTTT---PL 471
QW E+ L +LW LWK R E F + N +++ R +
Sbjct: 346 LGNGNPQW----EKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRT 401
Query: 472 STESSITTKCKEKTTIQTWRPPSTPYIKINVDASFVNLNEQAGIGYIIRDADANYIIAVA 531
ES T +++ WRPP ++K N DA++ NE+ GIG+++R+ A
Sbjct: 402 EAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA 461
Query: 532 DTV-RGQHAEECESLAILSGLIGAMQLQLSYVHLESDNQAIIQALNGNGGSLQWQS-QCI 589
+ + + E E A+ ++ + Q +YV ESD+Q +I+ LN + W S +
Sbjct: 462 RALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPT 518
Query: 590 IRQIKDIKDKFTGIIFTYVSRNCNTYADALAK 621
I+ ++ + +FT + F ++ R NT A+ +A+
Sbjct: 519 IQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 108 bits (271), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 143/291 (49%), Gaps = 24/291 (8%)
Query: 348 IPRIILFLWKCCTNSLPVKAK-IGKFIGNNYSCVNCNEEETIDHVMLHCSFAKAIWFHFQ 406
+P+I LFLWK +LPV A+ + + I + + C C ET H++ HC FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 407 VRTDHI---TTTIQWIQQWK------PLEEETINLYAKILWFLWKARCENCFMTNKQNPL 457
++ HI T ++ + K P+ T L+ I W +WKAR + F +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---F 117
Query: 458 QMIERITNTTTTPLSTESSITTKCKEKTTIQTWRPPSTPYIKIN----VDASFVNLNEQA 513
+IE +T L+ +S+ K + T RP ST + + VDA++ + A
Sbjct: 118 SVIETVTKAVQDALAWQSA--QLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLA 175
Query: 514 GIGYIIR---DADANYIIAVADTVRGQHAEECESLAILSGLIGAMQLQLSYVHLESDNQA 570
G G++ + ++ A R E+ AI S ++ A+QL+ S + + SD+++
Sbjct: 176 GSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKS 235
Query: 571 IIQALNGNGGSLQWQSQCIIRQIKDIKDKFTGIIFTYVSRNCNTYADALAK 621
I+ ALN N SL + ++ +I+ I+++F I F ++ R N+ ADA AK
Sbjct: 236 IVDALNSN-VSLN-EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 138/310 (44%), Gaps = 41/310 (13%)
Query: 342 IWNMNTIPRIILFLWKCCTNSLPVKAKIGK-FIGNNYSCVNC-NEEETIDHVMLHCSFAK 399
IW + T P+I FLWK + +L + + I N+ C C E+ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 400 AIWF-----HFQVRTDHITTTIQW-------IQQWKPLEEETINLYAKILWFLWKARCEN 447
+W H ++RT IT + + +P + NL ILW LWK+R +
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQP---QLFNLAIWILWRLWKSRNQL 134
Query: 448 CFMTNK---QNPLQM----IERITNTTTTPLSTESSITTKCKEKTTIQ--TW-RPPSTPY 497
F QN LQ ++ +T T S + + ++ T+ W RPPST +
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPST-W 193
Query: 498 IKINVDASFVNLNEQAGIGYIIRDADANYI---IAVADTVRGQHAEECESLAILSGLIGA 554
IK N D +F + A G+++RD + Y+ A+ T + E E A++ + A
Sbjct: 194 IKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSD--SLESEFQALIIAMQHA 251
Query: 555 MQLQLSYVHLESDNQAIIQALNG---NGGSLQWQSQCIIRQIKDIKDKFTGIIFTYVSRN 611
V E D++ + + +N N G W IR+ + + +F +F +V R
Sbjct: 252 WSQGYRKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRT 306
Query: 612 CNTYADALAK 621
N AD LAK
Sbjct: 307 NNQPADILAK 316
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 169/381 (44%), Gaps = 43/381 (11%)
Query: 276 WNLNVINMYFNNDICSAILSINL-NTNDEDKAIWTLTKSGNFSLKSMYNFLRNN------ 328
W+ + I+ + + I I L + DK IW +G ++++S Y L ++
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 329 TLYTTQDQMDW-FFIWNMNTIPRIILFLWKCCTNSLPVKAKIG-KFIGNNYSCVNCNEE- 385
+ +D IWN+ +P++ FLW+ + +L ++ + + + SC C+ E
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHREN 207
Query: 386 ETIDHVMLHCSFAKAIW-------FHFQVRTDHITTTIQWIQQWKPLEEETINLYAKIL- 437
E+I+H + C FA W Q+ ++ I I + +++ T++ + K+L
Sbjct: 208 ESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNF--VQDTTMSDFHKLLP 265
Query: 438 ----WFLWKARCENCFMTNKQNPLQMIERITNTTTTPL-STESSITTKCKEKTTIQT--- 489
W +WKAR F +++P + + T L +T+S T + +
Sbjct: 266 VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE 325
Query: 490 WRPPSTPYIKINVDASFVNLNEQAGIGYIIRDADANYI----IAVADTVRGQHAEECESL 545
WR P Y+K N DA F +A G+IIR+ I + +A T + E E+
Sbjct: 326 WRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHT---SNPLEAETK 382
Query: 546 AILSGLIGAMQLQLSYVHLESDNQAIIQALNGNGGSLQWQSQCIIRQIKDIK---DKFTG 602
A+L+ L + V +E D Q +I +NG + + S + ++DI +KF
Sbjct: 383 ALLAALQQTWIRGYTQVFMEGDCQTLINLING----ISFHS-SLANHLEDISFWANKFAS 437
Query: 603 IIFTYVSRNCNTYADALAKWG 623
I F ++ R N A LAK+G
Sbjct: 438 IQFGFIRRKGNKLAHVLAKYG 458
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 40/317 (12%)
Query: 342 IWNMNTIPRIILFLWKCCTNSLPVKAKI-GKFIGNNYSCVNCN-EEETIDHVMLHCSFAK 399
IW ++ P+I FLW+C T +L ++ + I + C C EEETI H+M +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 400 AIWFHFQVRTDHITTTIQW-------------IQQWKPLEEETINLYAK--ILWFLWKAR 444
++W R+ +I QW IQ K +++ + I+W LWK+R
Sbjct: 97 SVW-----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 445 CENCFMTNKQNP-LQMIERITNTTTTPLSTESSITTKCKEKT-TIQT-------WRPPST 495
F Q+P + + I + T + E++ T T IQT W PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 496 PYIKINVDASFVNLNEQAGIGYIIRDADANYIIAVADTVRGQHAE-ECESLAILSGLIGA 554
++K N D+ + + G+ IR+ + + ++ ++ E+L L L
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 555 MQLQLSYVHLESDNQAIIQAL-NGNGGSLQWQSQCIIRQIKDIKDKFTGIIFTYVSRNCN 613
L YV ESD+++++ + NG SL +I I+ K +V+R N
Sbjct: 272 WAHGLRYVWFESDSKSLVTLINNGEDHSLL---GTLIYDIRHWMLKLPYCSLEFVNRERN 328
Query: 614 TYADALAKWGRSHGHKK 630
+ ADALA SH H +
Sbjct: 329 SAADALA----SHVHAR 341