BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g2230.1
         (110 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    43   1e-05

>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 42.7 bits (99), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 21  LNEKNYDMWSQIMEMHIAEKEKLSFIGGNTLPPTEDDIKYEKWYTENQKVKRWLLMSMTP 80
           + E NYD W ++   H    + +  I G  LP   +D+ ++K    +  VK  L  ++TP
Sbjct: 26  IEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQK---RDGIVKLSLYGTLTP 82

Query: 81  -EIMKRYIRLPTTRDIWKALSKAFYDGSD 108
            +    ++   T+RDIW  +   F +  D
Sbjct: 83  KQFQGSFVTSSTSRDIWLRIKNQFRNNKD 111

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