BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g2250.1
         (219 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    54   2e-08

>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 55  SSTWILDSGASRHMSPDLSSFVSLKHISDLPVRTTDG-----TPMSLGGIGSVV----TP 105
            + W++ S  S HM+P +  F +L       V+   G     T   + GIG V       
Sbjct: 266 ENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG 325

Query: 106 NLSLQNVLHVPNLTLNLASISQLCDSGCLV-LFSSTGCYVQDVQSQKLIGTG--RRRG 160
           N +++NVL+VP +  N  S+SQL  +G  V +   TGC+V D  + K+ G     +RG
Sbjct: 326 NKTIKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCFVWDRTTGKMFGKNMWEKRG 383

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