BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000040.1_g0010.1
(166 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 72 6e-15
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 60 5e-11
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 71.6 bits (174), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 103 LVERFKHTLTPIISPFQAAYVPGRQITDNIIMGQEIIHSFKKMKSSAGYFGLKLDMSKAF 162
+VER K +T +I P QA+++PGR TDNI+ QE +HS ++ K G+ LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 163 DRI 165
DRI
Sbjct: 61 DRI 63
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 60.5 bits (145), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 6 LLAILDKEEIDWAIQSLKKEAASGPDGYPPFFFQSNWETVNADIYDLVQNFFKTTYLLPD 65
L A+ +EI A+ ++ + A GPD + FF +W V V+ FF+T +LL
Sbjct: 527 LSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKR 586
Query: 66 INHTHICLIPKTPIPQTPADYRPISLLNTTYKIIT 100
N T I LIPK + +RP+S YKIIT
Sbjct: 587 FNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621