BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000040.1_g0020.1
(394 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 123 2e-30
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 88 1e-18
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 88 1e-18
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 88 1e-18
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 87 4e-18
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 123 bits (308), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 29/309 (9%)
Query: 64 AVPRYQMQCFAIPKGISKSIKAVQRNFWW---GKSKGICTKAWSYICTPKKLGGLGLHLP 120
A+P Y M CF +PK + K I +V +FWW ++KG+ KAW ++ K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 121 DLDNTALLSKMAWRLKTEPAAIWVKLLKAKYFPHSNTP--GPAKVHHSWNWKTIRKHCSL 178
+ N ALL K WR+ + P ++ K+ K++YF H + P P S+ WK+I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 179 LDDLSTWEVQSGNDINIWTGNWIPEINGTI----------QNNNHSDLTKVAQLI--SNN 226
L + V +G DI IW W+ + + + S + KV+ LI S
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 227 NWNNEVLRANFDVNIKNLIKTI-PVNSEGKDQLRWKLTKSGKFTVASMYQYLSN-NNSNH 284
W +V+ F + LI + P D W T SG +TV S Y L+ N
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 285 NPN-------NQNWNFIWSLPTVPRIKMFIWKICTKALPVKERIG-KYIDNNTTCPNCTS 336
+P N + IW T P+I+ F+WK + +LPV + +++ + C C S
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 337 I-ESIEHAL 344
E++ H L
Sbjct: 301 CKETVNHLL 309
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 KYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQVGRTVVISAIATAVPRYQMQCF 73
+YLG L T + ++E I+ ++ KW LS GR +IS++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 AIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGLHLPDLDNTALLSK 130
+P K I ++ +F W + K AWS +CTPK GGLG+ N L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 131 MAWRLKTEPAAIWVKLLKAKYFPHSN--TPGPAKVHHSWNWKTIRKHCSLLDDLSTWEVQ 188
+ WR+ + ++WV+ L+ + + SW WK I KH +L ++
Sbjct: 146 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 189 SGNDINIWTGNWIPEINGTIQNNNHSDL--------TKVAQLISNNNWNNEVLRANFDVN 240
+G++ + W NW +I I H VA+ + N+ R + +
Sbjct: 205 NGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH--RHDTLLR 261
Query: 241 IKNLIKTIPVN--SEGKDQLRWK 261
I+++I + + G+D +RWK
Sbjct: 262 IEDVIAEVRHQGLTSGEDTVRWK 284
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 KYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQVGRTVVISAIATAVPRYQMQCF 73
+YLG L T + ++E I+ ++ KW LS GR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGLHLPDLDNTALLSK 130
+P K I ++ +F W + K AWS +CTPK GGLG+ N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 MAWRLKTEPAAIWVKLLKAKYFPHSN--TPGPAKVHHSWNWKTIRKHCSLLDDLSTWEVQ 188
+ WR+ + ++WV+ L+ + + SW WK I KH +L ++
Sbjct: 200 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 189 SGNDINIWTGNWIPEINGTIQNNNHSDL--------TKVAQLISNNNWNNEVLRANFDVN 240
+G++ + W NW +I I H VA+ + N+ R + +
Sbjct: 259 NGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH--RHDTLLR 315
Query: 241 IKNLIKTIPVN--SEGKDQLRWK 261
I+++I + + G+D +RWK
Sbjct: 316 IEDVIAEVRHQGLTSGEDTVRWK 338
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 KYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQVGRTVVISAIATAVPRYQMQCF 73
+YLG L T + ++E I+ ++ KW LS GR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGLHLPDLDNTALLSK 130
+P K I ++ +F W + K AWS +CTPK GGLG+ N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 MAWRLKTEPAAIWVKLLKAKYFPHSN--TPGPAKVHHSWNWKTIRKHCSLLDDLSTWEVQ 188
+ WR+ + ++WV+ L+ + + SW WK I KH +L ++
Sbjct: 200 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 189 SGNDINIWTGNWIPEINGTIQNNNHSDL--------TKVAQLISNNNWNNEVLRANFDVN 240
+G++ + W NW +I I H VA+ + N+ R + +
Sbjct: 259 NGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH--RHDTLLR 315
Query: 241 IKNLIKTIPVN--SEGKDQLRWK 261
I+++I + + G+D +RWK
Sbjct: 316 IEDVIAEVRHQGLTSGEDTVRWK 338
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 119/263 (45%), Gaps = 19/263 (7%)
Query: 14 KYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQVGRTVVISAIATAVPRYQMQCF 73
+YLG L T + ++E I+ ++ KW LS GR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGLHLPDLDNTALLSK 130
+P K I ++ +F W + K AWS +CTPK GGLG+ N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 MAWRLKTEPAAIWVKLLKAKYFPHSN--TPGPAKVHHSWNWKTIRKHCSLLDDLSTWEVQ 188
+ WR+ + ++WV+ L+ + + SW WK I KH +L ++
Sbjct: 200 LIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 189 SGNDINIWTGNWIPEINGTIQNNNHS---DL-----TKVAQLISNNNWNNEVLRANFDVN 240
+G++ + W NW +I I H D+ VA+ + N+ R + +
Sbjct: 259 NGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH--RHDTLLR 315
Query: 241 IKNLIKTIPVN--SEGKDQLRWK 261
I+++I + + G+D +RWK
Sbjct: 316 IEDVIAEVRHQGLTSGEDTVRWK 338