BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0160.1
(299 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 59 9e-10
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 47 1e-05
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 44 7e-05
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 29/183 (15%)
Query: 91 ESPEELIRSLILGNKYNPKKTKYYFYLIWLFWKARNELIFKNKPLHLPSIHLGAIKASNN 150
E+ EL+ S L N+ P+ +++W WK+RN+L+F+ K + + ++ + N
Sbjct: 98 ETKMELLLSSCLANR-QPQLFNLAIWILWRLWKSRNQLVFQQKSISWQN----TLQRARN 152
Query: 151 D-------------LNPSSDDLAHQYELM-----QRPVDAGMVY-FDGSFGNN--RASVG 189
D LN HQ M QRP + Y +DG+F + A G
Sbjct: 153 DVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAG 212
Query: 190 VVVQNGNGEVLVHEGKRISSNS--ALESEGKALLEAVSLVRELGFPTTLFIGDSRTVVQA 247
++++ NG V + G+ I S + +LESE +AL+ A+ G+ +F GDS+ V +
Sbjct: 213 WLMRDENG-VYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEEL 271
Query: 248 ISN 250
++N
Sbjct: 272 MNN 274
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 31/198 (15%)
Query: 82 CCWHVGTWEESPEELIRSLILGNKY------------NPKKTKYY----FYLIWLFWKAR 125
C + W S LIR+ ++ N + + + ++ +LIW WKAR
Sbjct: 217 CPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKAR 276
Query: 126 NELIFKNKPLHLPSIHLGAIKASNND-LN----------PSSDDLAHQYELMQRPVDAGM 174
N ++F NK PS + + KA +D LN P+ ++ E P
Sbjct: 277 NNVVF-NKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVK 335
Query: 175 VYFDGSFGNNR--ASVGVVVQNGNGEVLVHEGKRISSNS-ALESEGKALLEAVSLVRELG 231
FD F + A+ G +++N G + +++ S LE+E KALL A+ G
Sbjct: 336 CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 395
Query: 232 FPTTLFIGDSRTVVQAIS 249
+ GD +T++ I+
Sbjct: 396 YTQVFMEGDCQTLINLIN 413
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 116 YLIWLFWKARNELIFKNKPLHLPSIHLGAI--------------KASNNDL--NPSSDDL 159
+L+W WK+RNEL+FK K P + A+ KAS + N S
Sbjct: 79 WLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWK 138
Query: 160 AHQYELMQRPVDAGMVYFDGSFGNNRASVGVVVQNGNGEVLVHEGKRIS-SNSALESEGK 218
A Y+ ++ DA N R +G +++N +G VL + + + + LE+E +
Sbjct: 139 APPYQWVKCNTDATW-----QLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELE 193
Query: 219 ALLEAVSLVRELGFPTTLFIGDSRTVVQAISNGGKCVPWRIIALILQ-IREQVEGFTWNH 277
AL AV + + +F D++ +V +++ W + L+ I++ + F
Sbjct: 194 ALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDF---WPTLQPALEDIQQLLHHFEEVK 250
Query: 278 FVAISRVDNSCAHDVAASALA 298
F R N A +A +++
Sbjct: 251 FEFTPRGGNKVADRIARESIS 271