BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0170.1
(1051 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06370.1 | NC domain-containing protein-like protein | Chr5:1... 228 1e-67
AT3G02700.1 | NC domain-containing protein-like protein | Chr3:5... 183 6e-52
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 187 4e-50
AT5G16360.1 | NC domain-containing protein-like protein | Chr5:5... 173 5e-48
AT2G01290.1 | ribose-5-phosphate isomerase 2 | Chr2:149192-14998... 171 1e-47
>AT5G06370.1 | NC domain-containing protein-like protein |
Chr5:1947299-1948432 REVERSE LENGTH=259 | 201606
Length = 259
Score = 228 bits (580), Expect = 1e-67, Method: Composition-based stats.
Identities = 100/131 (76%), Positives = 114/131 (87%), Gaps = 1/131 (0%)
Query: 1 MGLFSNRIDKESLKPGDHIYSWRTAYVYAHHGIYVGDDKVIHFTRGRGQEVGTGTALDFL 60
MGL SNRID+ SLKPGDHIYSWRTAY+YAHHGIYVGDD+VIHFTR RGQEVGTGT LD +
Sbjct: 1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTR-RGQEVGTGTVLDLI 59
Query: 61 LLSSGPTRSQIPCPICTQQEEGNGVVSSCLNCFLSGGILYRFEYAVTPALFLAKARGGTC 120
L+SSGP+R+ CP C EG+GVVSSCLNCFL+GG+LYRFEY+V A FL KARGGTC
Sbjct: 60 LVSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTC 119
Query: 121 TLAVSDPDKIV 131
TLAV+DP++IV
Sbjct: 120 TLAVADPNEIV 130
>AT3G02700.1 | NC domain-containing protein-like protein |
Chr3:581727-582813 REVERSE LENGTH=252 | 201606
Length = 252
Score = 183 bits (465), Expect = 6e-52, Method: Composition-based stats.
Identities = 79/127 (62%), Positives = 96/127 (75%)
Query: 1 MGLFSNRIDKESLKPGDHIYSWRTAYVYAHHGIYVGDDKVIHFTRGRGQEVGTGTALDFL 60
MG SN+I ++ +KPGDHIYSWR AY+YAHHGIYVG+ +V HFTRG GQE GTGT LD +
Sbjct: 1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60
Query: 61 LLSSGPTRSQIPCPICTQQEEGNGVVSSCLNCFLSGGILYRFEYAVTPALFLAKARGGTC 120
++SS PCP C + GV+SSCL CFL+GG LY FEY+V+PA+FLAK RGG C
Sbjct: 61 IVSSSHNHGDNPCPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGVC 120
Query: 121 TLAVSDP 127
T+A SDP
Sbjct: 121 TIASSDP 127
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 187 bits (476), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 163/572 (28%), Positives = 260/572 (45%), Gaps = 83/572 (14%)
Query: 392 AVPRYLMQCFAIPKGICKRITTIQKSFWW---GKSRGICTKSWSSICLPKVLGGLGIHRT 448
A+P Y M CF +PK +CK+I ++ FWW +++G+ K+W + K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 449 ELDNIALLSKLAWRLKAEPDALWVRFLKDKYYPNTESPGA-FKARHSWLWKTITRQIHKI 507
E N+ALL K WR+ + P++L + K +Y+ ++ A +R S++WK+I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 508 DELTTWKVHNGSQINIWTDNW--------------IPGTNHSHVSTNNTNFIKVAQLINN 553
+ V NG I IW W +P ++ VS+ +KV+ LI+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSS----ILKVSDLIDE 177
Query: 554 D--RWDDIALNNTFDQLTQNLIKAIPICPDGA---DQRIWSLTKSGKYTVKSMYNYLCTS 608
W + F ++ + LI + P G D W T SG YTVKS Y L
Sbjct: 178 SGREWRKDVIEMLFPEVERKLIGELR--PGGRRILDSYTWDYTSSGDYTVKSGYWVLTQI 235
Query: 609 INSPMNQQ--------PNWKFIWNIPNVPRIQIFIWKICIKALPVRERIG-KFINNN--- 656
IN + Q P ++ IW P+IQ F+WK +LPV + + ++
Sbjct: 236 INKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESAC 295
Query: 657 LYCPNCEAIETIEHALLHCPLAKNIWFHFNIISEKIENLTEWIFS------WEF-----T 705
+ CP+C+ ET+ H L C A+ W I S I EW S W F
Sbjct: 296 IRCPSCK--ETVNHLLFKCTFARLTW---AISSIPIPLGGEWADSIYVNLYWVFNLGNGN 350
Query: 706 PQFKDKSFQNLLSTILWIIWKTRCDHCFQHEITDLSHIIRMI-NKFPNIKISNNKI---T 761
PQ++ S L+ +LW +WK R + F+ + ++R + +I T
Sbjct: 351 PQWEKAS--QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGT 408
Query: 762 KPLNN-----KWNPPEHPWLKMNVDASFTNVNEMTGISLIIHD--ASAKFVEAHTTITRS 814
KP N +W PP H W+K N DA++ NE GI ++ + K++ A + +
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGAR-ALPKL 467
Query: 815 RNSEEGEALAILEGLHWAV----KHQYKDIIIESDNINIISHLQYPEHVVHWQS-RVHIK 869
++ E E LE + WAV + QY +I ESD+ +I L E W S + I+
Sbjct: 468 KSVLEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQ 520
Query: 870 RIKETLNDLDRVKFNYVNRNCNIPADRLAKRA 901
++ L+ VKF ++ R N A+R+A+ +
Sbjct: 521 DLQRLLSQFTEVKFVFIPREGNTLAERVARES 552
>AT5G16360.1 | NC domain-containing protein-like protein |
Chr5:5355236-5356195 REVERSE LENGTH=283 | 201606
Length = 283
Score = 173 bits (438), Expect = 5e-48, Method: Composition-based stats.
Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 4/135 (2%)
Query: 1 MGLFSNRIDKESLKPGDHIYSWRTAYVYAHHGIYVGDDKVIHFTRGRGQEVGTGTALDFL 60
MGLFS++I ++ LKPGDHIYSWR AY+Y+HHG+YVGD+KVIHFTRG G E GTGT LD +
Sbjct: 1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60
Query: 61 LLSSGPT--RSQIPCPICTQQEEGNGVVSSCLNCFLSGGILYRFEYAVTPALFLAKARGG 118
+ S P R C C Q GV+SSCL+CFL+GG L+ FEY+ +P++FLAK RGG
Sbjct: 61 IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RGG 119
Query: 119 TCTLAVSDP-DKIVA 132
TCT+A SDP D++++
Sbjct: 120 TCTIASSDPCDEVIS 134
>AT2G01290.1 | ribose-5-phosphate isomerase 2 | Chr2:149192-149989
REVERSE LENGTH=265 | 201606
Length = 265
Score = 171 bits (434), Expect = 1e-47, Method: Composition-based stats.
Identities = 80/105 (76%), Positives = 97/105 (92%)
Query: 940 RQVAAYKAVEFVESGMILGSGTGSTAYHAINRIDELLNKGILKNIVRIPTSKKSEEQAIR 999
+++AAYKAVEFVESGM+LG GTGSTA HA++RI ELL +G L+NIV IPTSKK++EQA+
Sbjct: 37 KRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALS 96
Query: 1000 LGIPLSDLDSHPVLDLAIDGADEVDPYLNLVKGCGGSLLRKKMIK 1044
LGIPLSDLD+HPV+DL+IDGADEVDP+LNLVKG GGSLLR+KMI+
Sbjct: 97 LGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIE 141