BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0210.1
(373 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 59 1e-09
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 59 1e-09
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 49 5e-06
AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486 RE... 47 8e-06
AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675 RE... 48 8e-06
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 161 GAGAVLISPEEGRTFHTTTFKFSVTNNEAEYEALLAGLRLALKARCTNVQVYNDSQLVVN 220
GAGAVL + + F+ + TNN AEY ALL GLR AL NV V DS LV
Sbjct: 171 GAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCM 230
Query: 221 QIIGEYKVKRTDMIKYVKKSQGLN---PTLHESHHTRIPRQEIPRQ---EIALVDALSKM 274
Q+ G +K M + K+++ L T H R E +Q I L D +++
Sbjct: 231 QVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQTQV 290
Query: 275 IRG 277
I G
Sbjct: 291 ISG 293
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 161 GAGAVLISPEEGRTFHTTTFKFSVTNNEAEYEALLAGLRLALKARCTNVQVYNDSQLVVN 220
GAGAVL + + F+ + TNN AEY ALL GLR AL NV V DS LV
Sbjct: 171 GAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCM 230
Query: 221 QIIGEYKVKRTDMIKYVKKSQGLN---PTLHESHHTRIPRQEIPRQ---EIALVDALSKM 274
Q+ G +K M + K+++ L T H R E +Q I L D +++
Sbjct: 231 QVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQTQV 290
Query: 275 IRG 277
I G
Sbjct: 291 ISG 293
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 161 GAGAVLISPEEGRTFHTTTFKFSV-TNNEAEYEALLAGLRLALKARCTNVQVYNDSQLVV 219
GA AVL + E+G + TNN AEY AL+ GL+ A++ N++V DS+LV
Sbjct: 233 GAAAVLKT-EDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVC 291
Query: 220 NQIIGEYKVKRTDMIKYVKKSQGL 243
QI G++KV + K K+++ L
Sbjct: 292 MQIKGQWKVNHEVLAKLHKEAKLL 315
>AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486
REVERSE LENGTH=259 | 201606
Length = 259
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 161 GAGAVLISPEEGRTFHTTTFKFSVTNNEAEYEALLAGLRLALKARCTNVQVYNDSQLVVN 220
GA AVL + + F TNN AEY L+ GL+ A++ T ++V DS+LV
Sbjct: 139 GAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCM 198
Query: 221 QIIGEYKVKRTDMIKYVKKSQGLN 244
Q+ G++KV + K K+++ L+
Sbjct: 199 QMKGQWKVNHEVLSKLHKEAKQLS 222
>AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 161 GAGAVLISPEEGRTFHTTTFKFSVTNNEAEYEALLAGLRLALKARCTNVQVYNDSQLVVN 220
GA AVL + + F TNN AEY L+ GL+ A++ T ++V DS+LV
Sbjct: 202 GAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCM 261
Query: 221 QIIGEYKVKRTDMIKYVKKSQGLN 244
Q+ G++KV + K K+++ L+
Sbjct: 262 QMKGQWKVNHEVLSKLHKEAKQLS 285