BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0280.1
(284 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 78 6e-16
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 74 1e-14
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 69 9e-13
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 65 9e-12
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 56 4e-09
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 15/249 (6%)
Query: 3 PKIQTFIWKLVHEGLPLLKHIGDRVPYIDQDCQICLMGESETTNHLFGSCRVFKVLIHIA 62
PKIQ F+WK + LP+ + R + C C + ET NHL C ++ I+
Sbjct: 264 PKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK-ETVNHLLFKCTFARLTWAIS 322
Query: 63 ELD-DLQFIKEDPIKTLAAILKNKDITKEKWYQ----VTYLYWEWWKSRNELHFQNRVPN 117
+ L D I + N +W + V +L W WK+RNEL F+ R N
Sbjct: 323 SIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFN 382
Query: 118 LARCWWKTKDALRYITINPSSSSTIQTFQMN------WSPPEEGVIKINFDGSFKENEAS 171
+ +D L I + S Q+N W PP +K N D ++ +
Sbjct: 383 AQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNER 442
Query: 172 CAA--IARNSNGETVGIKKRLLDPI-SLIHSEIAALQEALNLADELSFSSFILEGDAKVL 228
C + RN GE + R L + S++ +E+ A++ A+ ++ I E D++VL
Sbjct: 443 CGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVL 502
Query: 229 IELIQAVEL 237
IE++ E+
Sbjct: 503 IEILNNDEI 511
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 26/304 (8%)
Query: 3 PKIQTFIWKLVHEGLPLLKHIGDRVPYIDQDCQICLMGESETTNHLFGSC----RVFKVL 58
PKI+ F+WKL+ L ++ R C C E ET+ HLF C +V++
Sbjct: 25 PKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQ-EDETSQHLFFDCFYAQQVWRAS 83
Query: 59 -IHIAELDDLQFIKEDPIKTL-AAILKNKDITKEKWYQVTYLYWEWWKSRNELHFQ---- 112
I EL E ++ L ++ L N+ + + ++ W WKSRN+L FQ
Sbjct: 84 GIPHQELRTTGITMETKMELLLSSCLANRQ--PQLFNLAIWILWRLWKSRNQLVFQQKSI 141
Query: 113 ------NRVPNLARCWWKTKDALRYITINPSSSSTIQ--TFQMNWSPPEEGVIKINFDGS 164
R N + W T ++ + SS Q + W P IK N+DG+
Sbjct: 142 SWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGA 201
Query: 165 FKENEASCAA--IARNSNGETVGIKKRLLDPIS-LIHSEIAALQEALNLADELSFSSFIL 221
F + A + R+ NG +G + + S + SE AL A+ A + I
Sbjct: 202 FNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIF 261
Query: 222 EGDAKVLIELIQAVELDIPWRLTALIDGLREKVNGRQLVLAYCPRMYNKDAHDLAISVL- 280
EGD+K + EL+ +L+ R + +G + + V + PR N+ A LA L
Sbjct: 262 EGDSKQVEELMNNEKLNFG-RFNWIREGRFWQKRFEEAVFKWVPRTNNQPADILAKHHLQ 320
Query: 281 PSQN 284
P+Q+
Sbjct: 321 PNQS 324
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 1 MLPKIQTFIWKLVHEGLPLLKHIGDRVPYIDQDCQICLMGESETTNHLFGSCRVFKVLIH 60
++PK++ F+W+ + + L + + R ID C C E+E+ NH +C +
Sbjct: 167 IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRC-HRENESINHALFTCPFATMAWR 225
Query: 61 IAE--LDDLQFIKEDPIKTLAAILKN-KDITKEKWYQV--TYLYWEWWKSRNELHFQNRV 115
+++ L Q + D + ++ IL +D T ++++ +L W WK+RN + F
Sbjct: 226 LSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFR 285
Query: 116 PNLARCWWKTK-------DALRYITINPSSSSTIQTFQMNWSPPEEGVIKINFDGSF--K 166
+ ++ K +A + PS + I ++ W P +K NFD F +
Sbjct: 286 ESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQ 345
Query: 167 ENEASCAAIARNSNGETVGIKK-RLLDPISLIHSEIAALQEALNLADELSFSSFILEGDA 225
+ EA+ I RN G + +L + + +E AL AL ++ +EGD
Sbjct: 346 KLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDC 405
Query: 226 KVLIELIQAVEL 237
+ LI LI +
Sbjct: 406 QTLINLINGISF 417
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 119/307 (38%), Gaps = 35/307 (11%)
Query: 1 MLPKIQTFIWKLVHEGLPLLKHIGDRVPYIDQDCQICLMGESETTNHLFGSC-------R 53
+ PKI+ F+W+ V L + R D CQ C + E ET +H+ +C R
Sbjct: 42 VAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCI-EEETIHHIMFNCPYTQSVWR 100
Query: 54 VFKVLIHIAELDDLQFIKEDPIKTLAAILKNKDITKEKWYQVTYLYWEWWKSRNELHFQN 113
++I F ED + L + K + + ++ W WKSRN FQ
Sbjct: 101 SANIIIGNQWGPPSSF--EDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQ 158
Query: 114 RV--PNL-ARCWWKTKDALRYITINPSSSST--------IQTFQMN---WSPPEEGVIKI 159
+ P+ AR +DA ++ N ++ +T IQT + + W+PP EG +K
Sbjct: 159 KCQSPDYEARK--GIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKC 216
Query: 160 NFDGSFKENEASCAA--IARNSNGETVGI-KKRLLDPISLIHSEIAALQEALNLADELSF 216
NFD + + + R NG V +L +H+E AL +
Sbjct: 217 NFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGL 276
Query: 217 SSFILEGDAKVLIELIQAVELDIPWRLTALIDGLREKVNGRQLVLAYCPRMYNKDAHDLA 276
E D+K L+ LI E +L+ L + L L YC + + A
Sbjct: 277 RYVWFESDSKSLVTLINNGEDH------SLLGTLIYDIRHWMLKLPYCSLEFVNRERNSA 330
Query: 277 ISVLPSQ 283
L S
Sbjct: 331 ADALASH 337
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 100 WEWWKSRNELHFQNRVPNLARCWWKTKD-------------ALRYITINPSSSSTIQTFQ 146
W W+SRN+L FQ++ + + KD +L + T+ ++ T Q
Sbjct: 2 WRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTHQ 61
Query: 147 MNWSPPEEGVIKINFDGSF--KENEASCAAIARNSNGETVGIKKRLLDPI-SLIHSEIAA 203
W P G IK N+DGSF + + + + R+ G G + + + + + SE+ A
Sbjct: 62 -KWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 204 LQEALNLADELSFSSFILEGDAKVLIELIQAVELDIPWRLTALIDGLREKVNG----RQL 259
L A+ + I EGD+K + EL+ ++ + +RE + ++
Sbjct: 121 LVMAMQHTWSQGYRKVIFEGDSKQVEELLNRKQMHF-----GAFNWIREAWSWSKRFEEV 175
Query: 260 VLAYCPRMYNKDAHDLAISVLP 281
+ ++ PR N+ A LA S LP
Sbjct: 176 IFSWTPRTNNQPADMLAKSHLP 197