BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000042.1_g0290.1
(482 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 78 2e-15
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 68 3e-12
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 65 8e-12
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 18 FITEKLDDSNYLMWRDQVETMLKTYDLIGFVNGSFEEPPQLRFIQGIEQVNPDFQNWRSK 77
F+T L+ NY +WR+ ET+ ++ ++G ++GS P + W+ +
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------------KRWKER 70
Query: 78 ESFVMSFLKSTLSKSIYYDIYGLQ-SAKEIWEYLDLTNNEGLESKKDQLRRKLQTVKKGD 136
+ V ++ T++ S+ I + +A+++W L+ + E++ Q +L+T D
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 137 ASIAEYLREIKHISDSLMTVHDRVSDSELVRIALNGLSSDYDQFTTALRAHNEILSLAQL 196
S+ EY +++K +SD L V +SD LV LNGL+ YD ++ + S +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 197 KSRLTQHE 204
+S L E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 12 ISAVTNFITEKLD--DSNYLMWRDQVETMLKTYDLIGFVNGSFEEPPQLRFIQGIEQVNP 69
+S + + I LD +SNY WR+ T ++D++G ++G+ + N
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------------LLPTNA 60
Query: 70 DFQNWRSKESFVMSFLKSTLSKSIYYDIYGLQS-AKEIWEYLDLTNNEGLESKKDQLRRK 128
+ NW+ ++ V L TL+ + + S +++IW + +++ +L +
Sbjct: 61 NDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSE 120
Query: 129 LQTVKKGDASIAEYLREIKHISDSLMTVHDRVSDSELVRIALNGLSSDYDQFTTALRAHN 188
L+T GD +A+Y R++K ++DSL V V+D LV LNGL+ +D ++
Sbjct: 121 LRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQ 180
Query: 189 EILSLAQLKSRLTQHEQWL 207
S + L + E L
Sbjct: 181 PFPSFDDAATMLQEEEDRL 199
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 9 LPP-ISAVTNFITEKL--DDSNYLMWRDQVETMLKTYDLIGFVNGSFEEPPQLRFIQGIE 65
LPP I ++F +KL D+ NY+ W+ + + L+ GF++G+ +P +
Sbjct: 20 LPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------D 70
Query: 66 QVNPDFQNWRSKESFVMSFLKSTLSKSIYYDIYGLQSAKEIWEYLDLTNNEGLESKKDQL 125
+P +Q W + VM +L ++++ + + ++A ++WE L ++ K QL
Sbjct: 71 PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQL 130
Query: 126 RRKLQTVKKGDASIAEYLREIKHI 149
RR+L T+++G S+ EY ++ +
Sbjct: 131 RRRLATLRQGGDSVEEYFGKLSKV 154