BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000042.1_g0310.1
         (211 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...   120   1e-34

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score =  120 bits (301), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 58  GVLRISKGSLTVMKGLKKNGLYVLQGNTVTGSVAVSSSDKEVETTKLWHMRLGHMSERGM 117
           GVL++ KG  T++KG + + LY+LQG+  TG   ++ + K+   T+LWH RL HMS+RGM
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD--ETRLWHSRLAHMSQRGM 84

Query: 118 TILSKQGLLCGQMVGKLEFCEHCVFGKQCQVKFSTAVHNTKGTLDYIHSDLWGHSQV 174
            +L K+G L    V  L+FCE C++GK  +V FST  H TK  LDY+HSDLWG   V
Sbjct: 85  ELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141

Top