BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0050.1
(534 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 97 5e-21
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 67 2e-11
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 65 7e-11
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 26/321 (8%)
Query: 169 MPKISNIINDLELMDMGFKGNPFTWTNKQFGDNLIQERLDKALANHPWLQLFKSS-GISH 227
+ + N + D +L+D+ +G +TW+N Q DN I +LD+A+AN W F S+ +
Sbjct: 249 LEEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DDNPIIRKLDRAIANGDWFSSFPSAIAVFE 307
Query: 228 LDSVGSDHLPILLSNQGGKHTQAKPFKFMRTWMSHPECHEFIGNIWANNEKDHTRD-DIQ 286
L V SDH P ++ + K F++ +HP + W + +
Sbjct: 308 LSGV-SDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLG 366
Query: 287 INLKSLSKRLTKWNKTVFGNIENNINEIIKSIQRSQNRKEHNELNNKLEELYNLQ----- 341
+LK+ K N+ FGNI++ E + S++ Q++ L N + L+ ++
Sbjct: 367 EHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQL----LTNPSDSLFRVEHVARK 422
Query: 342 ---------ESIWKEKSRNNFITLGDKNTKYFHAQAIQRSRTNRILAIKNDRDEWLEDIN 392
ES +++KSR ++ GD NT++FH + N I ++ D D +E++
Sbjct: 423 KWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVT 482
Query: 393 DIQD---TFSKHLLNI-STTTNPSNNTEILQLFLPTISPVQNNMLIKKPTHEEIDNAIRW 448
+++ + HLL S P + I + + + L P+ +EI A+
Sbjct: 483 QVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFA 542
Query: 449 LKKEAAPGPDGYPHYFFQSNW 469
+ + APGPD + FF +W
Sbjct: 543 MPRNKAPGPDSFTAEFFWESW 563
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 472 AAYVPGRQITDNIIIGQEIIHSYKKMKGGKGFFGLKLDMSKAFDRIEWSFITNIMRKLGY 531
A+++PGR TDNI+ QE +HS ++ KG KG+ LKLD+ KA+DRI W ++ + + G+
Sbjct: 18 ASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGF 77
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 129 WKKLVELNSGRDI---PWVVLGDLNIILDPKEKSGGNFSSNSR--MPKISNIINDLELMD 183
W + L++ + PW+V+GD N I E S+ S + + + D +L+D
Sbjct: 105 WDDITRLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGLEDLQACMRDSDLVD 164
Query: 184 MGFKGNPFTWTNKQFGDNLIQERLDKALANHPWLQLFKSSGISHLDSVGSDHLPIL-LSN 242
+ +G +TW+N Q DN I +LD+A+ N WL F ++ SDH + + N
Sbjct: 165 LPCRGVLYTWSNHQ-QDNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMVILN 223
Query: 243 QGGKHTQAKPFKFMRTWMSHPECHEFIGNIWANNEKDHTRDDIQINLKSLSKRLTK---- 298
++ K FK+ +HP +FI +I A +K+ +L L K K
Sbjct: 224 NSPPLSKKKSFKYFSFLSTHP---DFISSILAAWQKEIAVGSFMFSLGELLKEAKKACRG 280
Query: 299 WNKTVFGNIENNINEIIKSIQRSQNRKEHNELNNKLEELYNLQESIWKEKSRNNFITLGD 358
N+ F NI+ +++ + R EH N ES +K+KSR ++ GD
Sbjct: 281 LNRRGFSNIQ---AQLMSNPSDFLFRAEHVARKN-WNFFAAALESFYKQKSRIKWLKEGD 336