BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0060.1
(510 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 132 7e-33
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 88 2e-18
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 75 2e-14
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 72 2e-13
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 68 2e-12
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 132 bits (332), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 131/505 (25%), Positives = 234/505 (46%), Gaps = 58/505 (11%)
Query: 51 KSKGICTKSWKSICLPKDMGGLGIHSLDIDNIAMLSKQAWRVKTTPEAAWVKFLKAKYYP 110
++KG+ K+W + K GG+G ++ N+A+L KQ WR+ + PE+ K K++Y+
Sbjct: 35 EAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYF- 93
Query: 111 NLENP--GPVKKHHSWIWKNMCKSLNQINNLSIWEVKNGENINIWNDIWI---PHTNL-- 163
+ +P P+ S++WK++ S + + V NGE+I IW W+ P +
Sbjct: 94 HKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALR 153
Query: 164 -----PIINQHNSNLTNVSQLIENN--KWNENLLRDIFDENTQNLIKAI-PISQEGKDEL 215
P S++ VS LI+ + +W ++++ +F E + LI + P + D
Sbjct: 154 MQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSY 213
Query: 216 KWALTESGNFTVKSLYNHLRR-ENLDPNPDQTN-------WKFLWGLPVIPKIKIFLWKI 267
W T SG++TVKS Y L + N +P + + ++ +W PKI+ FLWK
Sbjct: 214 TWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKC 273
Query: 268 CNRALPVKGRIG-KYIGNNMNCHICNDI-ETMEHALLHCPVARNIWFHFNI---ISGN-I 321
+ +LPV G + +++ C C ET+ H L C AR W +I + G
Sbjct: 274 LSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWA 333
Query: 322 ESIK---DWIFSWKNSTHRCNNPKRTHFATILWIIWKTRCNSCFQGTKTETLSIINAIQN 378
+SI W+F+ N + + +LW +WK R F+G + ++ ++
Sbjct: 334 DSIYVNLYWVFNLGNGNPQWEKASQL-VPWLLWRLWKNRNELVFRGREFNAQEVLRRAED 392
Query: 379 ------FPDNSNEIITKKNKDTE---KWSPPIEPYFKLNVDASFKTIDAIIGTGLIVHDY 429
+ TK + +W PP + K N DA++ + G G ++ +
Sbjct: 393 DLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNE 452
Query: 430 KAA--FIGAAAACTRARNSKESEAITICKGMEWAI----QREYKHIIIESDSYNLIKHIK 483
K ++G A A + ++ E+E + M WA+ + +Y ++I ESDS LI+ +
Sbjct: 453 KGEVKWMG-ARALPKLKSVLEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLIEIL- 506
Query: 484 DRNHSIKWQS-KIHIQNIRDMMRSF 507
N+ W S K IQ+++ ++ F
Sbjct: 507 --NNDEIWPSLKPTIQDLQRLLSQF 529
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 171/417 (41%), Gaps = 43/417 (10%)
Query: 104 LKAKYYPNLE-NPGPVKKHHSWIWKNMCKSLNQINNLSIWEVKNGENINIWND-IWIPHT 161
+KA+Y+ ++ V+K S+ W ++ + + + + +G+NI I D I H
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 162 NLPIINQHNSNLTNVSQLIENNK----WNENLLRDIFDENTQNLIKAIPISQEGK-DELK 216
P+ + ++ L E W+++ + D++ I I +++ K D++
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 217 WALTESGNFTVKSLY---NHLRRENLDP-NPDQTNWKF---LWGLPVIPKIKIFLWKICN 269
W +G +TV+S Y H N+ NP + +W LP++PK+K FLW+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 270 RALPVKGRI-GKYIGNNMNCHICN-DIETMEHALLHCPVARNIW-------FHFNIISGN 320
+AL R+ + + + +C C+ + E++ HAL CP A W ++S +
Sbjct: 181 QALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSND 240
Query: 321 IESIKDWIFSWKNSTHRCNNPKRTHFATILWIIWKTRCNSCFQ-----------GTKTET 369
E I ++ T + K ++W IWK R N F K ET
Sbjct: 241 FEENISNILNFVQDTTMSDFHKLLP-VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAET 299
Query: 370 LSIINAIQNF---PDNSNEIITKKNKDTEKWSPPIEPYFKLNVDASFKTIDAIIGTGLIV 426
+NA Q+ P + +I K +W P Y K N DA F G I+
Sbjct: 300 HDWLNATQSHKKTPSPTRQIAENK----IEWRNPPATYVKCNFDAGFDVQKLEATGGWII 355
Query: 427 HDYKAAFIG-AAAACTRARNSKESEAITICKGMEWAIQREYKHIIIESDSYNLIKHI 482
++ I + N E+E + ++ R Y + +E D LI I
Sbjct: 356 RNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 412
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 26/282 (9%)
Query: 234 LRRENLDPNPDQTNWK-FLWGLPVIPKIKIFLWKICNRALPVKGRI-GKYIGNNMNCH-I 290
L E + P P T K +W L V PKIK FLW+ AL R+ + I + C
Sbjct: 19 LEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRC 78
Query: 291 CNDIETMEHALLHCPVARNIWFHFNIISGN----IESIKDWI--FSWKNSTHRCNNPKRT 344
C + ET+ H + +CP +++W NII GN S +D + + T N+ R
Sbjct: 79 CIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRF 138
Query: 345 HFATILWIIWKTRCNSCFQG-TKTETLSIINAIQNFPD--NSNEI------------ITK 389
I+W +WK+R FQ ++ IQ+ + N+NE I
Sbjct: 139 LPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQT 198
Query: 390 KNKDTEKWSPPIEPYFKLNVDASFKTIDAIIGTGLIVHDYKAAFIGAAAACTRARN-SKE 448
+D+ +W+PP E + K N D+ + +G + + + A ++ S
Sbjct: 199 SRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLH 258
Query: 449 SEAITICKGMEWAIQREYKHIIIESDSYNLIKHIKD-RNHSI 489
+EA+ ++ +++ ESDS +L+ I + +HS+
Sbjct: 259 AEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNGEDHSL 300
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 239 LDPNPDQTNWKF-LWGLPVIPKIKIFLWKICNRALPVKGRIG-KYIGNNMNCH-ICNDIE 295
+ P P + K +W L PKIK FLWK+ + AL + ++I N+ CH C + E
Sbjct: 5 IQPPPGKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDE 64
Query: 296 TMEHALLHCPVARNIWFHFNI------ISG-NIESIKDWIFSWKNSTHRCNNPKRTHFAT 348
T +H C A+ +W I +G +E+ + + S S P+ + A
Sbjct: 65 TSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLS---SCLANRQPQLFNLAI 121
Query: 349 -ILWIIWKTRCNSCFQGTKTETLSII----NAIQNFPDNSNEIITKKNKDTE-------- 395
ILW +WK+R FQ + + N +Q + D +N + N+
Sbjct: 122 WILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWED-TNTYVQSLNQQVHSSRHQQPT 180
Query: 396 ----KWSPPIEPYFKLNVDASFKTIDAIIGTGLIVHDYKAAFIGAAAAC-TRARNSKESE 450
KW P + K N D +F G ++ D ++G+ A + +S ESE
Sbjct: 181 MARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESE 240
Query: 451 AITICKGMEWAIQREYKHIIIESDS 475
+ M+ A + Y+ +I E DS
Sbjct: 241 FQALIIAMQHAWSQGYRKVIFEGDS 265
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 19/267 (7%)
Query: 257 IPKIKIFLWKICNRALPVKGR-IGKYIGNNMNCHICNDIETMEHALLHCPVARNIWFHFN 315
+PKIK+FLWK ALPV + + ++I + +C C ET H L HC A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 316 IISGNIESIKDWIFSWKNSTHR--CNNPKRTHFAT----ILWIIWKTRCNSCFQGTKTET 369
+ G+I I I N + P H AT I W IWK R FQ +
Sbjct: 61 LQLGHIP-IGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 119
Query: 370 L-SIINAIQNFP--DNSNEIITKKNKDTEK--WSPPIEPYFKLNVDASFKTIDAIIGTGL 424
+ ++ A+Q+ ++ + K T + + + F VDA+++ ++ G+G
Sbjct: 120 IETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGW 179
Query: 425 IVHDYKAA---FIGAAAACTRARNSKESEAITICKGMEWAIQREYKHIIIESDSYNLIKH 481
+ + +A C R + +EA I M A+Q E +++ SDS +++
Sbjct: 180 VFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDA 239
Query: 482 IKDRNHSIK--WQSKIHIQNIRDMMRS 506
+ + N S+ + + I++IR+ RS
Sbjct: 240 L-NSNVSLNEIFGLLVEIRSIRNRFRS 265