BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0140.1
(242 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24500.2 | hydroxyproline-rich glycoprotein family protein | ... 51 3e-07
AT4G24500.3 | hydroxyproline-rich glycoprotein family protein | ... 50 4e-07
AT4G24500.1 | hydroxyproline-rich glycoprotein family protein | ... 50 4e-07
>AT4G24500.2 | hydroxyproline-rich glycoprotein family protein |
Chr4:12658732-12660211 FORWARD LENGTH=290 | 201606
Length = 290
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 15/69 (21%)
Query: 183 FYNKLVLEDPWKTLEPVV--------------RSWLPKSINAKMAKVSESSSKFSS-QLS 227
FY+ + EDPWK L+PV+ ++WLPKSI K + SE++ K SS Q S
Sbjct: 212 FYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLPKSIAPKKSVTSEATHKTSSNQQS 271
Query: 228 LAEYLTVSM 236
LAEYL S+
Sbjct: 272 LAEYLAASL 280
>AT4G24500.3 | hydroxyproline-rich glycoprotein family protein |
Chr4:12658732-12660211 FORWARD LENGTH=319 | 201606
Length = 319
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 15/69 (21%)
Query: 183 FYNKLVLEDPWKTLEPVV--------------RSWLPKSINAKMAKVSESSSKFSS-QLS 227
FY+ + EDPWK L+PV+ ++WLPKSI K + SE++ K SS Q S
Sbjct: 241 FYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLPKSIAPKKSVTSEATHKTSSNQQS 300
Query: 228 LAEYLTVSM 236
LAEYL S+
Sbjct: 301 LAEYLAASL 309
>AT4G24500.1 | hydroxyproline-rich glycoprotein family protein |
Chr4:12658732-12660211 FORWARD LENGTH=319 | 201606
Length = 319
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 15/69 (21%)
Query: 183 FYNKLVLEDPWKTLEPVV--------------RSWLPKSINAKMAKVSESSSKFSS-QLS 227
FY+ + EDPWK L+PV+ ++WLPKSI K + SE++ K SS Q S
Sbjct: 241 FYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLPKSIAPKKSVTSEATHKTSSNQQS 300
Query: 228 LAEYLTVSM 236
LAEYL S+
Sbjct: 301 LAEYLAASL 309