BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0150.1
(435 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 73 8e-14
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 69 1e-12
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 55 3e-08
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 52 8e-08
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 15/163 (9%)
Query: 18 IPIKLQSDNYLAWKSLFLPVLKKFRVYDLIDGSRLCPPQFINEENRQTNIINQEYIKWVE 77
+ + L NY W+ LF + F V IDGS P + E+ +W E
Sbjct: 24 VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP--MTEK------------RWKE 69
Query: 78 EDQTLLIWLNSTLSDSVIPYVVGTS-SSRELWLNLEENFAAASTAHVLQLQDRLRECKKG 136
D + +W+ T++DS++ ++ ++R+LWL+LE F A LQ ++ LR
Sbjct: 70 RDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTID 129
Query: 137 ASTMVEFLSNIKKITDSLTAAGSPASKNEVIVSILRGLPSEFD 179
++ E+ +K ++D LT SP S +++ +L GL ++D
Sbjct: 130 DLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYD 172
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 18 IPIKL--QSDNYLAWKSLFLPVLKKFRVYDLIDGSRLCPPQFINEENRQTNIINQEYIKW 75
IP+ L + NY AW+ LFL F V IDG+ L P N + W
Sbjct: 20 IPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT-LLP-------------TNANDVNW 65
Query: 76 VEEDQTLLIWLNSTLSDSVIP-YVVGTSSSRELWLNLEENFAAASTAHVLQLQDRLRECK 134
+ D + + L TL+ V +S+SR++WL ++ F A L+L LR
Sbjct: 66 QKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKD 125
Query: 135 KGASTMVEFLSNIKKITDSLTAAGSPASKNEVIVSILRGLPSEFDSFGTSIRIRR 189
G + ++ +KK+ DSL P + +++ +L GL +FD+ I+ R+
Sbjct: 126 IGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQ 180
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 24 SDNYLAWKSLFLPVLKKFRVYDLIDGSRLCPPQFINEENRQTNIINQEYIKWVEEDQTLL 83
DNY+AWK F L+ + + IDG+ P F + Y W + + ++
Sbjct: 39 EDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF-----------SPLYQPWEQCNAMVM 87
Query: 84 IWLNSTLSDSVIPYVVGTSSSRELWLNLEENFAAASTAHVLQLQDRLRECKKGASTMVEF 143
WL ++++D ++ V+ ++ ++W +L F + QL+ RL ++G ++ E+
Sbjct: 88 YWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEY 147
Query: 144 LSNIKKI 150
+ K+
Sbjct: 148 FGKLSKV 154
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 275 VVKDLFSDQMLFRGHSEGGLYPLHFGSSSSIQPTFSAFSVSSPTTLTWHRRLGHPSFQTI 334
V+K L + + +G+ LY L GS + + + + T WH RL H S + +
Sbjct: 28 VLKVLKGCRTILKGNRHDSLYILQ-GSVETGESNLA--ETAKDETRLWHSRLAHMSQRGM 84
Query: 335 QKL--KHLLPQASTFQPIFCKECHLGRSKKLPFYPSNNCTSVPLEILHIDLWGPAVVP 390
+ L K L + FC++C G++ ++ F + T PL+ +H DLWG VP
Sbjct: 85 ELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142