BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0230.1
(602 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65540.1 | transcription initiation factor TFIID subunit | Ch... 547 0.0
>AT5G65540.1 | transcription initiation factor TFIID subunit |
Chr5:26195710-26198112 FORWARD LENGTH=605 | 201606
Length = 605
Score = 547 bits (1409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/624 (50%), Positives = 422/624 (67%), Gaps = 41/624 (6%)
Query: 1 MSLLGDDGLGYELARKLEICGVWRSWLGESNYSIFLNYLSSPSTWQSFMRTDDSKTRAQI 60
M+LLGDDG G++LARKLE+ GVWR+WLG+S YS F +YLSSPSTW++FMR D+SK+RAQI
Sbjct: 1 MALLGDDGRGFDLARKLEVSGVWRTWLGDSIYSSFHHYLSSPSTWEAFMRVDESKSRAQI 60
Query: 61 VLQLRARALLFDKASVSLFLRSPSLPSSSSSSSSSSLAAAAAPSKLNPTYLQLHGDDVYF 120
LQLR RALLFDKA+VSLFLRS ++ +SSSSS+S S ++ A SKLNP YLQLHGDDVY+
Sbjct: 61 QLQLRVRALLFDKATVSLFLRSNTIAASSSSSASISDVSSVAVSKLNPNYLQLHGDDVYY 120
Query: 121 SLEDFYYNSQ-DGEGG---SANLIQSKIQPKVSGNA-------DSISQRTRHEELPETWY 169
+LE+ S EGG + +L +S +P + ++SQR+R EELP+TWY
Sbjct: 121 TLENASLESGFQREGGIRHNPSLTKSLSKPSFTSGTRGSESDFSNLSQRSRFEELPDTWY 180
Query: 170 NQFFEKYKASRQHRLPFGDRESHKRTPEGMSTYIKILERHKRSRKAFKEDQYNGVGNPMR 229
QF +Y ++ + G +ES KRTPEGMSTY+++++ HKR R F ED+
Sbjct: 181 TQFISRYGF--KYGMSVGGQESDKRTPEGMSTYLRVVDTHKRKRAPFLEDR--------- 229
Query: 230 ENGLHVRQSSISDVN----SSVDDETSFFPEMMFPSNCVPDSALPPAKAQEDNQKVEFYG 285
+ H+ +SS + S+ +D+ F PE MF NCVP++AL P +DN K EFYG
Sbjct: 230 -SLAHMSRSSTHPSSGFDGSTSEDDILFLPETMFRMNCVPETALSPITRTQDNLKTEFYG 288
Query: 286 VLDSLPHVMTRSPAMLERFGIRPEYLQV---GLGRSKYRGKNGLEGNGKSLGQEQALQIS 342
VLD+LP V TRS M+ER G+ PEY ++ G+ RS+ K G +QA +S
Sbjct: 289 VLDTLPQVTTRSHIMIERLGLMPEYHRMEERGVLRSRKAEKMG-------FSDDQAALVS 341
Query: 343 QKVIARMLANVGFEGSTEVPMEVLSQFLSCHIEKLGRILKVLTDNYRKQCSALEILKMFL 402
+KV+ARML +GFEG+TEVP++V SQ +S H+ KLGRILK+LTD+Y+K+CSA++++KMFL
Sbjct: 342 RKVVARMLLTMGFEGATEVPIDVFSQLVSRHMSKLGRILKLLTDSYKKECSAMQLIKMFL 401
Query: 403 QTVGYSNLGTLVEHVKDGIRTLPNPTQQQIVRGVQSGLQPQLQPILQQQQIQNHIHPQMQ 462
T GYSNLG+L E VKDG R P P Q+Q Q Q + QQIQ +HPQMQ
Sbjct: 402 NTTGYSNLGSLAEIVKDGTRNHPPPNQKQPQVLQQQLHLQQQASLRLPQQIQRQMHPQMQ 461
Query: 463 NLTFQQQ---QQQWERMRRQQPPTPRAGMNMAKDRPMVQVKIENASDSPMDGNNFNPMGP 519
+ Q QQQ ERMRR+ +PR M+M KDRP+VQVK+EN S+ +DGN FNPM P
Sbjct: 462 QMVNPQNFQQQQQLERMRRRPVTSPRPNMDMEKDRPLVQVKLENPSEMAVDGNAFNPMNP 521
Query: 520 VNPRTAQMQIRQQQIAAAMANIQAQSGH-QFKQLTNLQIPQLQLQNNVPVRAPPVKVEGF 578
+ + Q Q+RQQQ AAM+N+Q Q G+ QF+QL ++QIPQ+Q VRA PVKVEGF
Sbjct: 522 RHQQQLQQQLRQQQQIAAMSNMQQQPGYNQFRQLASMQIPQMQTPTLGTVRAQPVKVEGF 581
Query: 579 QELMGGDGTMKRDFEDHKLTSPSK 602
++LMGGD ++K D +D + P+K
Sbjct: 582 EQLMGGDSSLKHDSDDKLRSPPTK 605