BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0350.1
(758 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 171 3e-45
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 128 6e-31
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 128 6e-31
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 129 2e-30
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 124 8e-30
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 171 bits (433), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 145/563 (25%), Positives = 256/563 (45%), Gaps = 41/563 (7%)
Query: 194 ITTYFLGLSIIPQGTLNRLERIERNFWWDHNEEERKMHFLPWELIQKPKQMGGLGVRSLA 253
+ TY + ++P+ ++ + +FWW + +E + MH+ W+ + K GG+G + +
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 254 KINESLVAKLAWRFLNQPEAIWVRVLKAKYTVTGDYWTETKKYNASPIWMSLLHVRDTLR 313
N +L+ K WR L++PE++ +V K++Y D S +W S+ ++ LR
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 314 DKVCFQVGDGSTINIHRDPWV---PTVKGFK----PEVKQRRHTDYLMVSDLI--INQKW 364
VG+G I I R W+ P + P + + L VSDLI ++W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
Query: 365 KESLIYDLFDPNAAREILKIPLSNAWTRDRLIWTPHQKGVFSVKSYYREITPQIQNTRSI 424
++ +I LF + I ++ D W G ++VKS Y +T QI N RS
Sbjct: 183 RKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLT-QIINKRSS 241
Query: 425 P--------NFPWMKLWNTKCIEPKIALFLWKLVNDGLPLLHNISRGQPTMDPTCLLCGQ 476
P N + K+W ++ PKI FLWK +++ LP+ ++ + + C+ C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQ-TSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 477 EIETVKHLFGTCSRFVELMDSAKN-HMQITVESDSTLFIKKMI------ENQHNEKDLVF 529
ETV HL C+ F L + + + + E ++++ N EK
Sbjct: 301 CKETVNHLLFKCT-FARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 359
Query: 530 GAYLLWEFWKGRNNLLFNHHNINIPSIVVQALSRSRGYLNRS-STSAAMDVQIS------ 582
+LLW WK RN L+F N ++ +A + R+ + S Q++
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 583 WIPPPLNKIKLNFDAGFTLNG--AAIAVIVRDHEGRKVDQRSEKI-EAQSAMEAETKACL 639
W PPP +K N DA + + I ++R+ +G + + + +S +EAE +A
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 640 LALRFGQELGLHQALYEGDCKVIIDAISNGWDDYTW-RLEPYIQEAKSLLSSGNLGSLLF 698
A+ + ++E D +V+I+ ++N D W L+P IQ+ + LLS +F
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTEVKFVF 536
Query: 699 CPREANVEAHMLAQQTLLILLFE 721
PRE N A +A+++L L ++
Sbjct: 537 IPREGNTLAERVARESLSFLNYD 559
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 197/437 (45%), Gaps = 25/437 (5%)
Query: 70 ISHLLFADDLLIFGESTTQNLEAVIQLMDSYSKFSGQAVNYNKSSLFFSAGVPTEVKSAF 129
I+HL FADDLL+F + ++E ++Q+ ++ FSG ++ KS+++ AGV K+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 130 QTKLKCPLMSDSEKYLGILMLKPRNRVHAHEFLIEKFKSKLAGWKKKLMSQAGRTTLIKA 189
+ +YLG+ +L + + L+EK + ++ W + +S AGR LI +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 190 VLNPITTYFLGLSIIPQGTLNRLERIERNFWWDHNEEERKMHFLPWELIQKPKQMGGLGV 249
V++ +T +++ +P + ++ I +F W E K + W + PK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 250 RSLAKINESLVAKLAWRFLNQPEAIWVRVLKAKYTVTGDYWTETKKYN-ASPIWMSLLHV 308
RSL + N+ + KL WR L+ ++WV+ L+ G +W+ + S +W +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 309 RDTLRDKVCFQVGDGSTINIHRDPW-----VPTVKGFKPEVKQRRHTDYLMVSDLIINQK 363
R V + +GS + D W + V G + + T + V++ ++N +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGI-TLHASVAEAVVNHR 304
Query: 364 WKESLIYDLFD-PNAAREILKIPLSNAWTRDRLIWTPHQ---KGVFSVKSYYREI-TPQI 418
+ L + E+ L++ D + W + K F+ K + P++
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSG--EDTVRWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 419 QNTRSIPNFPWMK-LWNTKCIEPKIALFLWKLVNDGLPLLHNISRGQPTMDPTCLLCGQE 477
+ W K +W + PK ++ W + + L + D +C+LC
Sbjct: 363 K-------VNWYKGVWFSHAT-PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHL 414
Query: 478 IETVKHLFGTCSRFVEL 494
+ET HLF TC E+
Sbjct: 415 VETRDHLFFTCPYSAEV 431
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 197/437 (45%), Gaps = 25/437 (5%)
Query: 70 ISHLLFADDLLIFGESTTQNLEAVIQLMDSYSKFSGQAVNYNKSSLFFSAGVPTEVKSAF 129
I+HL FADDLL+F + ++E ++Q+ ++ FSG ++ KS+++ AGV K+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 130 QTKLKCPLMSDSEKYLGILMLKPRNRVHAHEFLIEKFKSKLAGWKKKLMSQAGRTTLIKA 189
+ +YLG+ +L + + L+EK + ++ W + +S AGR LI +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 190 VLNPITTYFLGLSIIPQGTLNRLERIERNFWWDHNEEERKMHFLPWELIQKPKQMGGLGV 249
V++ +T +++ +P + ++ I +F W E K + W + PK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 250 RSLAKINESLVAKLAWRFLNQPEAIWVRVLKAKYTVTGDYWTETKKYN-ASPIWMSLLHV 308
RSL + N+ + KL WR L+ ++WV+ L+ G +W+ + S +W +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 309 RDTLRDKVCFQVGDGSTINIHRDPW-----VPTVKGFKPEVKQRRHTDYLMVSDLIINQK 363
R V + +GS + D W + V G + + T + V++ ++N +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGI-TLHASVAEAVVNHR 304
Query: 364 WKESLIYDLFD-PNAAREILKIPLSNAWTRDRLIWTPHQ---KGVFSVKSYYREI-TPQI 418
+ L + E+ L++ D + W + K F+ K + P++
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSG--EDTVRWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 419 QNTRSIPNFPWMK-LWNTKCIEPKIALFLWKLVNDGLPLLHNISRGQPTMDPTCLLCGQE 477
+ W K +W + PK ++ W + + L + D +C+LC
Sbjct: 363 K-------VNWYKGVWFSHAT-PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHL 414
Query: 478 IETVKHLFGTCSRFVEL 494
+ET HLF TC E+
Sbjct: 415 VETRDHLFFTCPYSAEV 431
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 202/452 (44%), Gaps = 27/452 (5%)
Query: 70 ISHLLFADDLLIFGESTTQNLEAVIQLMDSYSKFSGQAVNYNKSSLFFSAGVPTEVKSAF 129
I+HL FADDLL+F + ++E ++Q+ ++ FSG ++ KS+++ AGV K+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 130 QTKLKCPLMSDSEKYLGILMLKPRNRVHAHEFLIEKFKSKLAGWKKKLMSQAGRTTLIKA 189
+ +YLG+ +L + + L+EK + ++ W + +S AGR LI +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 190 VLNPITTYFLGLSIIPQGTLNRLERIERNFWWDHNEEERKMHFLPWELIQKPKQMGGLGV 249
V++ +T +++ +P + ++ I +F W E K + W + PK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 250 RSLAKINESLVAKLAWRFLNQPEAIWVRVLKAKYTVTGDYWTETKKYN-ASPIWMSLLHV 308
RSL + N+ + KL WR L+ ++WV+ L+ G +W+ + S +W +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 309 RDTLRDKVCFQVGDGSTINIHRDPWVPTVKGFKPEVKQRRH------TDYLMVSDLIINQ 362
R V + +GS + D W G +V R T + V++ ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKI--GRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 363 KWKESLIYDLFD-PNAAREILKIPLSNAWTRDRLIWTPHQ---KGVFSVKSYYREI-TPQ 417
+ + L + E+ L++ D + W + K F+ K + P+
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGLTSG--EDTVRWKGNGDIFKPCFNTKETWAATREPK 361
Query: 418 IQNTRSIPNFPWMK-LWNTKCIEPKIALFLWKLVNDGLPLLHNISRGQPTMDPTCLLCGQ 476
++ W K +W + PK ++ W + + L + D +C+LC
Sbjct: 362 LK-------VNWYKGVWFSHAT-PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 413
Query: 477 EIETVKHLFGTCSRFVELMDSAKNHMQITVES 508
+ET HLF TC E+ + Q+T+ S
Sbjct: 414 LVETRDHLFFTCPYSAEVPFLTRYTFQLTLHS 445
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 124 bits (311), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 191/439 (43%), Gaps = 34/439 (7%)
Query: 302 WMSLLHVRDTLRDKVCFQVGDGSTINIHRDPWVPTVKGFKPEVKQRRHTDYLMVSDLIIN 361
W SLL L+ +GDG I I D V P T M + +
Sbjct: 24 WASLLDGIALLKKGTRHLIGDGQNIRIGLDN---IVDSHPPRPLNTEETYKEMTINNLFE 80
Query: 362 QK-----WKESLIYDLFDPNAAREILKIPLSNAWTRDRLIWTPHQKGVFSVKSYYREITP 416
+K W +S I D + I +I L+ + D++IW + G ++V+S Y +T
Sbjct: 81 RKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTH 140
Query: 417 QIQNTRSIPNFPW------MKLWNTKCIEPKIALFLWKLVNDGLPLLHNISRGQPTMDPT 470
N P ++WN I PK+ FLW+ ++ L ++ +DP+
Sbjct: 141 DPSTNIPAINPPHGSIDLKTRIWNLP-IMPKLKHFLWRALSQALATTERLTTRGMRIDPS 199
Query: 471 CLLCGQEIETVKHLFGTC---SRFVELMDSA--KNH-MQITVESDSTLFIKKMIENQHNE 524
C C +E E++ H TC + L DS+ +N M E + + + + + ++
Sbjct: 200 CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSD 259
Query: 525 KDLVFGAYLLWEFWKGRNNLLFNHHNINIPSIVVQALSRSRGYLNR--------SSTSAA 576
+ +L+W WK RNN++FN + V+ A + + +LN S T
Sbjct: 260 FHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQI 319
Query: 577 MDVQISWIPPPLNKIKLNFDAGFTLNG--AAIAVIVRDHEGRKVDQRSEKIEAQS-AMEA 633
+ +I W PP +K NFDAGF + A I+R+H G + S K+ S +EA
Sbjct: 320 AENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEA 379
Query: 634 ETKACLLALRFGQELGLHQALYEGDCKVIIDAISNGWDDYTWRLEPYIQEAKSLLSSGNL 693
ETKA L AL+ G Q EGDC+ +I+ I NG ++ L ++++ +
Sbjct: 380 ETKALLAALQQTWIRGYTQVFMEGDCQTLINLI-NGISFHS-SLANHLEDISFWANKFAS 437
Query: 694 GSLLFCPREANVEAHMLAQ 712
F R+ N AH+LA+
Sbjct: 438 IQFGFIRRKGNKLAHVLAK 456