BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0440.1
(459 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 122 4e-31
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 104 2e-24
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 100 3e-24
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 98 2e-23
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 101 6e-23
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 122 bits (305), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 14/239 (5%)
Query: 6 IGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWIIPAHLR--VM 63
+GNGE FW D+W G L + + + ++++V +G+W +PA
Sbjct: 16 MGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQ 75
Query: 64 LGDIANRIEEVLIDNSEVDTVVWKCNKDGVY----SMKDTYNFLRPTKETVGWASIIWFK 119
L A + V ++ D+ +W+ N G Y S +DT+ +R TV WA ++WFK
Sbjct: 76 LFLAALTMAPVPHESRGQDSFLWR-NAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFK 134
Query: 120 DMIPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQCSYAREVWV 179
+ IPR S I W+ +R T+ +L WG++I LC +G E HLF +CS++ +W
Sbjct: 135 EYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIW- 193
Query: 180 RITQFIGCHARVFS--GWEEYIGWIINFFKGESSSNNLKKLLVIAFLYHIWGERNRRMF 236
+F R G WI+ S S + KLL+ + +YH+W ERN R+F
Sbjct: 194 ---EFFASKFRPSPPFGLPAASSWILQ-LPLRSHSTTILKLLLQSAVYHVWKERNARIF 248
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 104 bits (259), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 16/274 (5%)
Query: 6 IGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWIIPAHL--RVM 63
+G+G KFW D+W LG L L ++ V + +W I + +
Sbjct: 16 VGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPI 75
Query: 64 LGDIANRIEEV--LIDNSEVDTVVWKCN---KDGVYSMKDTYNFLRPTKETVGWASIIWF 118
+ + N + E L+D D+ +WK + +S T++ L P TV W +WF
Sbjct: 76 IVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWF 135
Query: 119 KDMIPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQCSYAREVW 178
K+ +P+H+FI W+V R T+ +L NWGL I +C LC + HLF +C ++ VW
Sbjct: 136 KNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVW 195
Query: 179 VRITQFIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAF---LYHIWGERNRRM 235
T + + +N+ S N+ ++ +AF +Y IW ERN+R+
Sbjct: 196 RFFTASTNLNP------PAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRL 249
Query: 236 FKAKSLPAESVFWKIFNEVRLKVAGAQIKVVDKP 269
S ES+ I +R ++ +P
Sbjct: 250 HSGVSRSTESILKDIQLIIRARLDPLSRSTAHQP 283
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 100 bits (249), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 94 YSMKDTYNFLRPTKETVGWASIIWFKDMIPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPK 153
+S T+ LRP + V WA +WFK P+H+F W+ R TK +L +WG+ +
Sbjct: 30 FSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTT 89
Query: 154 CCLCQHGMEDELHLFTQCSYAREVWVRITQFIGCHARVFSGWEEYIGWIINFFKGESSSN 213
C LC +ED HLF C +A +W ++ + A F W + + W + + S
Sbjct: 90 CGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAFSFVVWNDLMDWTLQ--RNRRSPP 147
Query: 214 NLKKLLVIAFLYHIWGERNRRMFKAKSLPAESVFWKIFNEVRLKVAG 260
L+KL+V + LY IW +RN + +++ VF I E++ +
Sbjct: 148 TLRKLIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREIKNSITA 194
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 98.2 bits (243), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 89 NKDGVYSMKDTYNFLRPTKETVGWASIIWFKDMIPRHSFIGWLVIQQRQKTKVKLLNWGL 148
NK+ T+ L P E V W IWFK IP+H+FI W+ ++ R TK ++++WG
Sbjct: 20 NKEIDLEATATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGF 79
Query: 149 DIDPKCCLCQHGMEDELHLFTQCSYAREVWVRITQFIGCHARVFSGWEEYIGWIINFFKG 208
P C C E HLF C +AREVW+ T + + +E+ I W+ N +
Sbjct: 80 IFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVHVFPPLL--FEDGIRWLKNPCQD 137
Query: 209 ESSSNNLKKLLVIAFLYHIWGERNRRMFKAKSLPAESVFWKIFNEVR 255
++ + L +L A +Y IW ERN R+ + S PA ++ +I + +R
Sbjct: 138 KNVTTIL-RLSHHASVYTIWKERNARLHDSASRPAAALILEIKSVIR 183
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 24/283 (8%)
Query: 1 MVHHIIGNGEDTKFWDDSWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWIIPAHL 60
V H I NG +T FW D+W +G L D + ++ V+ +++ P
Sbjct: 198 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRH 254
Query: 61 RVMLGDIANRIEEVLID------NSEVDTVVWKCNKD---GVYSMKDTYNFLRPTKETVG 111
R D RIE+V+ + S DTV WK N D ++ K+T+ R K V
Sbjct: 255 R---HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 311
Query: 112 WASIIWFKDMIPRHSFIGWLVIQQRQKTKVKLLNWGLDIDPKCCLCQHGMEDELHLFTQC 171
W +WF P++S + W+ I+ R T ++L+W D C LC H +E HLF C
Sbjct: 312 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 371
Query: 172 SYAREVWVRITQFIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAF---LYHIW 228
Y+ EVW +T+ + + WE I+ +S + + L F L+ +W
Sbjct: 372 PYSAEVWSTLTRKL-LSQHFTNRWEA----ILKLLTNKSLGHEVPFLTRYTFQLTLHSLW 426
Query: 229 GERNRRMFKAKSLPAESVFWKIFNEVRLKVAGAQIKVVDKPYN 271
ERN R A + + +VR +++ Q + D+ YN
Sbjct: 427 KERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ-EDRRYN 468