BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000051.1_g0470.1
         (143 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    67   6e-14
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    44   2e-05

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 66.6 bits (161), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 12/138 (8%)

Query: 9   LPP-ISAVTNFITEKL--DDSNYLMWRDQVETMLKTYELIGFVNGSIEEPPQLKFIQGIE 65
           LPP I   ++F  +KL  D+ NY+ W+ +  + L+  +  GF++G++ +P         +
Sbjct: 20  LPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------D 70

Query: 66  QVNPDFQQWRSRESFVMSYLKSSLSKSIYYDIYGLQSAKAIWEYLDLTNNEGLESKKDQL 125
             +P +Q W    + VM +L +S++  +   +   ++A  +WE L       ++ K  QL
Sbjct: 71  PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQL 130

Query: 126 RRKLQNLRKGDASIAEYL 143
           RR+L  LR+G  S+ EY 
Sbjct: 131 RRRLATLRQGGDSVEEYF 148


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 43.5 bits (101), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 18  FITEKLDDSNYLMWRDQVETMLKTYELIGFVNGSIEEPPQLKFIQGIEQVNPDFQQWRSR 77
           F+T  L+  NY +WR+  ET+  ++ ++G ++GS    P  +            ++W+ R
Sbjct: 23  FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------------KRWKER 70

Query: 78  ESFVMSYLKSSLSKSIYYDIYGL-QSAKAIWEYLDLTNNEGLESKKDQLRRKLQNLRKGD 136
           +  V  ++  +++ S+   I  +  +A+ +W  L+    +  E++  Q   +L+     D
Sbjct: 71  DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130

Query: 137 ASIAEYL 143
            S+ EY 
Sbjct: 131 LSVHEYC 137

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