BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000051.1_g0770.1
         (411 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29785.1 | Pol-like polyprotein/retrotransposon | Chr3:116123...    54   6e-09

>AT3G29785.1 | Pol-like polyprotein/retrotransposon |
          Chr3:11612357-11612686 REVERSE LENGTH=109 | 201606
          Length = 109

 Score = 53.9 bits (128), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 11 LDGENYLMWKAKMEDLLYCKDLAAPIENHGTKPMKMDEEDWKVLDRKVVGFIRQWVATSV 70
          +DG +Y   + K+ED LY K L  P+   G K   M ++DW +L R+V+  IR  ++ ++
Sbjct: 9  VDGTSYSFCRMKIEDYLYGKKLHQPL---GKKVETMSQDDWNILYRQVLDVIRLTISKNI 65

Query: 71 FHHVSTETSAFSLWRKLEELYDQKTA 96
           H+V+ E S   L + L ++Y + + 
Sbjct: 66 AHNVAKEKSPDGLMKVLSDIYKKPST 91

Top