BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0940.1
(150 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 51 8e-08
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 47 1e-06
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 44 1e-05
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 41 7e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 50.8 bits (120), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 2 VGPITNNNQSNLVTVSQLIQNN--QWNEATLRDNFDPSISNLIKAI-PLQEEGLDQMKLS 58
V P + S+++ VS LI + +W + + F LI + P LD
Sbjct: 157 VPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWD 216
Query: 59 LTQSGNFSVKFMYHNLN--ISQNLQPLQAFN------WNFIWSIPTIPRIHLFLWKCCSG 110
T SG+++VK Y L I++ P + + IW T P+I FLWKC S
Sbjct: 217 YTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSN 276
Query: 111 ALSVRKRIG----KYKGNNYICPNCNDIEIIEHALLHCSFAK 148
+L V + + CP+C E + H L C+FA+
Sbjct: 277 SLPVAGALAYRHLSKESACIRCPSCK--ETVNHLLFKCTFAR 316
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 97 IPRIHLFLWKCCSGALSVRKR-IGKYKGNNYICPNCNDIEIIEHALLHCSFAKSV 150
+P+I LFLWK +GAL V + + ++ + + C C E H L HC FA V
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQV 55
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 44.3 bits (103), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 25 WNEATLRDNFDPSISNLIKAIPL-QEEGLDQMKLSLTQSGNFSVKFMYHNL--NISQNLQ 81
W+++ + D S I I L + + D++ + +G ++V+ Y L + S N+
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 82 PLQAFNWNF-----IWSIPTIPRIHLFLWKCCSGALSVRKRIGKYKGN-NYICPNCN-DI 134
+ + + IW++P +P++ FLW+ S AL+ +R+ + CP C+ +
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHREN 207
Query: 135 EIIEHALLHCSFA 147
E I HAL C FA
Sbjct: 208 ESINHALFTCPFA 220
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 41.2 bits (95), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 91 IWSIPTIPRIHLFLWKCCSGALSVRKR-IGKYKGNNYICPNCNDIEIIEHALLHCSFAK 148
IWS+ P+I L +WK + AL V + + + C C D E I H L +C FA+
Sbjct: 9 IWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCPFAQ 67