BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g0970.1
(483 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 112 3e-28
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 62 3e-10
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 53 3e-07
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 112 bits (281), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 12/212 (5%)
Query: 20 PFDVHHSDSPTTILITPLITG-DNYCSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQ 78
P D+HH P+ I L DNY +W LR K GF+DG++ KP + L Q
Sbjct: 21 PPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQ 77
Query: 79 -WGRCNDLVSSWLINSVDLPLRSSILYDETASDIWHNLYDRFHQSNAPKIFQLKRAISCL 137
W +CN +V WL+NS+ L S++Y ETA +W +L F KI+QL+R ++ L
Sbjct: 78 PWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL 137
Query: 138 KQDNSDVSTYFTNLKALQDELNSLLITEPCTCGHG-----RSLVERTNQDRAMEFLQG-- 190
+Q V YF L + EL+ C CG + E +++ EFL G
Sbjct: 138 RQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLK 197
Query: 191 LNDRFSSIRSQILLNEPFPSILRIHSLIKQEE 222
LN F ++ ++I+ +P PS+ +++K E
Sbjct: 198 LNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 32 ILITPLITGDNYCSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLI 91
I +T + NY W + G LG +DGS PT P ++W + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 92 NSV-DLPLRSSILYDETASDIWHNLYDRFHQSNAPKIFQLKRAISCLKQDNSDVSTYFTN 150
++ D L + I TA D+W +L + F + + Q + + D+ V Y
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 151 LKALQDELNSLLITEPCTCGHGRSLVERTNQDRAMEFLQGLNDRFSSIRSQILLNEPFPS 210
LK+L D L + + P + R LV M L GL +++ I + I PFPS
Sbjct: 140 LKSLSDLLTN--VDSPIS---DRVLV--------MHLLNGLTEKYDYILNVIKHKSPFPS 186
Query: 211 ILRIHSLIKQEE 222
S++ EE
Sbjct: 187 FTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 38 ITGDNYCSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLINSVD-L 96
I NY +W + +G +DG++ PT+ N++ W + + +V L ++
Sbjct: 26 IEESNYDAWRELFLTHCLSFDVMGHIDGTL-LPTNANDVN-WQKRDGIVKLSLYGTLTPK 83
Query: 97 PLRSSILYDETASDIWHNLYDRFHQSNAPKIFQLKRAISCLKQDNSDVSTYFTNLKALQD 156
+ S + T+ DIW + ++F + + +L + + V+ Y+ +K L D
Sbjct: 84 QFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLAD 143
Query: 157 ELNSLLITEPCTCGHGRSLVERTNQDRAMEFLQGLNDRFSSIRSQILLNEPFPSILRIHS 216
L ++ + P T R+LV M L GLN +F +I + I +PFPS +
Sbjct: 144 SLRNVDV--PVT---DRNLV--------MYVLNGLNPKFDNIINVIKHRQPFPSFDDAAT 190
Query: 217 LIKQEE 222
++++EE
Sbjct: 191 MLQEEE 196