BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000051.1_g0990.1
         (205 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    92   1e-22

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 91.7 bits (226), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 12/192 (6%)

Query: 22  DVHHSDSPTTILITPLLIG-DNYSSRSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQ-W 79
           D+HH   P+   I  L    DNY +        LR   K GF+DG++ KP   + L Q W
Sbjct: 23  DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPW 79

Query: 80  GRCNDLVSSWLINSVDPPLRSSILYDQTASDIWKNLFDRFHQTNAPKIFQLKRAISCLKQ 139
            +CN +V  WL+NS+   L  S++Y +TA  +W++L   F      KI+QL+R ++ L+Q
Sbjct: 80  EQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQ 139

Query: 140 ENLDVSTYFTHLMALQDELNSLLITEPCICGH-----GRSLVERTNQDRAMEFLQG--LN 192
               V  YF  L  +  EL+       C CG       +   E   +++  EFL G  LN
Sbjct: 140 GGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLN 199

Query: 193 DRFSSIRSQILL 204
             F ++ ++I+ 
Sbjct: 200 QGFEAVTTKIMF 211

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