BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1000.1
(867 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 153 8e-38
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 153 8e-38
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 105 7e-26
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 55 9e-09
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 49 2e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 717 RSRRPPSHLDDYVCSNTNTIK-YPLENYFSINSFSDSHQQFLSSVLSTTEPTSFTQAMKS 775
R R P++L DY C + ++ + + + S S + FL + EP+++ +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 776 SHWKEAMAKEISALEENKTWTMTSLPPGKRPIGCKWVYKIKFKSDGSIERYKARLVAKGY 835
W AM EI A+E TW + +LPP K+PIGCKWVYKIK+ SDG+IERYKARLVAKGY
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 836 TQIEGLDYSDTFAPVAKLVTVRVLLSLAAI 865
TQ EG+D+ +TF+PV KL +V+++L+++AI
Sbjct: 156 TQQEGIDFIETFSPVCKLTSVKLILAISAI 185
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 717 RSRRPPSHLDDYVCSNTNTIK-YPLENYFSINSFSDSHQQFLSSVLSTTEPTSFTQAMKS 775
R R P++L DY C + ++ + + + S S + FL + EP+++ +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 776 SHWKEAMAKEISALEENKTWTMTSLPPGKRPIGCKWVYKIKFKSDGSIERYKARLVAKGY 835
W AM EI A+E TW + +LPP K+PIGCKWVYKIK+ SDG+IERYKARLVAKGY
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 836 TQIEGLDYSDTFAPVAKLVTVRVLLSLAAI 865
TQ EG+D+ +TF+PV KL +V+++L+++AI
Sbjct: 156 TQQEGIDFIETFSPVCKLTSVKLILAISAI 185
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 105 bits (262), Expect = 7e-26, Method: Composition-based stats.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 758 SSVLSTT---EPTSFTQAMKSSHWKEAMAKEISALEENKTWTMTSLPPGKRPIGCKWVYK 814
S ++TT EP S A+K W +AM +E+ AL NKTW + P + +GCKWV+K
Sbjct: 17 SLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76
Query: 815 IKFKSDGSIERYKARLVAKGYTQIEGLDYSDTFAPVAKLVTVRVLLSLA 863
K SDG+++R KARLVAKG+ Q EG+ + +T++PV + T+R +L++A
Sbjct: 77 TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 54.7 bits (130), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 443 HRHILEVARSLRLQAHLPLSFWGECVLTAVYLINKLPTPILDGKSPHEVLMGSPPNLSHL 502
+R I+E RS+ + LP +F + TAV++INK P+ ++ P EV S P S+L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 503 RVFGCLCYARIPLIKTKMDARSSAG 527
R FGC+ Y I + K+ R+ G
Sbjct: 62 RRFGCVAY--IHCDEGKLKPRAKKG 84
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 244 GSLHDDLYFLRTERPILSVSNLVRDNSSHESFLFWHCRLGHPSFSRFQYF-------NSR 296
G+ HD LY L+ SNL ++ + WH RL H S + +S+
Sbjct: 41 GNRHDSLYILQGSVET-GESNLAE--TAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSK 97
Query: 297 LPCMKFNFLSDKVPCELCSLSKQSRLPFPNSTTTSSNILDIVHMDLWGPFPVP 349
+ +KF CE C K R+ F T+ N LD VH DLWG VP
Sbjct: 98 VSSLKF--------CEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142