BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1480.1
(436 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 143 2e-37
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 75 8e-16
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 68 3e-12
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 65 6e-11
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 64 1e-10
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 143 bits (361), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 211/507 (41%), Gaps = 89/507 (17%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWG---KSKAFHTLNWSAICKPRKLGGLGFRLPFLDNQA 57
M CF +PK +C I S+ FWW ++K H W + + GG+GF+ N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLNKYNWRLLNNPQAIRDQVLKGKYFPKSKKPSHPKANH-SWPWKSISKQFNQVEGLVFW 116
L K WR+L+ P+++ +V K +YF KS + P + S+ WKSI +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 DINKGTHINIWHDYWIPNHP----------PPLINQSGSNLEWVAQLI--TNNNWNMSVI 164
+ G I IW W+ + P PP S S++ V+ LI + W VI
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 165 NNCFNSDSCISIASINLQADQ-EDKPTWTLTKSGNFSIKSMYNFLM---------TESAE 214
F I + + D TW T SG++++KS Y L E +E
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247
Query: 215 PMQDQNDWFFIWNMNTISRIKLFLWKCCTNSVPVKEKIG-RFIDNSYSCINCNE-YETLD 272
P + + IW T +I+ FLWKC +NS+PV + R + +CI C ET++
Sbjct: 248 PSLNP-IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVN 306
Query: 273 HVILHCTFTKAIWFHFQVR-------TDQLTTINQWI-------KQWKIPNEEAHNLYAK 318
H++ CTF + W + D + W+ QW E+A L
Sbjct: 307 HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKASQLVPW 362
Query: 319 ILWFIWKDR------------------------------------AKPKNQKS-----RP 337
+LW +WK+R KP+ +S RP
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRP 422
Query: 338 PSTPFLKLNVDASFSTITEPAGIGCIIHDADANFIIAAADSV-RCQNAEECESMVIHSSM 396
P ++K N DA+++ E GIG ++ + A ++ + ++ E E + ++
Sbjct: 423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV 482
Query: 397 LWAIQLDINHVHIESDNQAVIQFINGN 423
L + N+V ESD+Q +I+ +N +
Sbjct: 483 LSLSRFQYNYVIFESDSQVLIEILNND 509
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 75.1 bits (183), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWGKSKAFHTLNWSA---ICKPRKL-GGLGFRLPFLDNQ 56
M CF + K +C + S FWW + ++W A +CK ++ GGLGFR NQ
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 AFLNKYNWRLLNNPQAIRDQVLKGKYFPKSKKPSHPKANH-SWPWKSISKQFNQVEGLVF 115
A L K ++R+++ P + ++L+ +YFP S S+ W+SI + +
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 WDINKGTHINIWHDYWIPNHPP 137
I G H +W D WI + P
Sbjct: 128 RTIGDGIHTKVWLDRWIMDETP 149
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 50/241 (20%)
Query: 233 RIKLFLWKCCTNSVPVKEK-IGRFIDNSYSCINCNEYETLDHVILHCTFTKAIW------ 285
+IKLFLWK ++PV + + R I +++ C C ET H++ HC F +W
Sbjct: 3 KIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPLQ 62
Query: 286 -FHFQVRTDQLTTINQWIKQWKIPNEEAH--NLYAKILWFIWKDR--------------- 327
H + T L +N K +P H L+ I W IWK R
Sbjct: 63 LGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIET 122
Query: 328 ----------------AKPKNQKS--RPPSTPFLKLN----VDASFSTITEPAGIGCIIH 365
A PK + + RP ST L + VDA++ + AG G +
Sbjct: 123 VTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGWVFQ 182
Query: 366 D---ADANFIIAAADSVRCQNAEECESMVIHSSMLWAIQLDINHVHIESDNQAVIQFING 422
++ +A R + E+ I S+ML A+QL+ + + + SD+++++ +N
Sbjct: 183 ATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNS 242
Query: 423 N 423
N
Sbjct: 243 N 243
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 122/307 (39%), Gaps = 32/307 (10%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWGKSK---AFHTLNWSAICKPRKLGGLGFRLPFLDNQA 57
M F +P I+S+ +F W + + WS +C P+ GGLG R N+
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 141
Query: 58 FLNKYNWRLLNNP----QAIRDQVL-KGKYFPKSKKPSHPKANHSWPWKSISKQFNQVEG 112
L K WR+L++ Q +R +L KG ++ S + SW WK I K G
Sbjct: 142 SLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASG 197
Query: 113 LVFWDINKGTHINIWHDYWIPNHPPPLINQSGSNL---------EWVAQLITNNNWNMSV 163
V DI+ G++ + W D W + LI+ +G VA+ + N+
Sbjct: 198 FVKHDIHNGSNTSFWFDNW--SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHR 255
Query: 164 INNCFNSDSCISIASINLQADQEDKPTWTLTKSGNFSI-KSMYNFLMTESA--EPMQDQN 220
+ + I+ ED W GN I K +N T +A EP N
Sbjct: 256 HDTLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVN 311
Query: 221 DWFFIWNMNTISRIKLFLWKCCTNSVPVKEKIGRF-IDNSYSCINCNEY-ETLDHVILHC 278
+ +W + + + W N + +++ + SC+ C+ ET DH+ C
Sbjct: 312 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 371
Query: 279 TFTKAIW 285
++ +W
Sbjct: 372 PYSAEVW 378
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 123/309 (39%), Gaps = 36/309 (11%)
Query: 1 MQCFAIPKGICTSIESLQRTFWWG-----KSKAFHTLNWSAICKPRKLGGLGFRLPFLDN 55
M F +P I+S+ +F W KA + WS +C P+ GGLG R N
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKA--KVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 56 QAFLNKYNWRLLNNP----QAIRDQVL-KGKYFPKSKKPSHPKANHSWPWKSISKQFNQV 110
+ L K WR+L++ Q +R +L KG ++ S + SW WK I K
Sbjct: 194 KVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALA 249
Query: 111 EGLVFWDINKGTHINIWHDYWIPNHPPPLINQSGSNL---------EWVAQLITNNNWNM 161
G V DI+ G++ + W D W + LI+ +G VA+ + N+
Sbjct: 250 SGFVKHDIHNGSNTSFWFDNW--SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRR 307
Query: 162 SVINNCFNSDSCISIASINLQADQEDKPTWTLTKSGNFSI-KSMYNFLMTESA--EPMQD 218
+ + I+ ED W GN I K +N T +A EP
Sbjct: 308 HRHDTLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 219 QNDWFFIWNMNTISRIKLFLWKCCTNSVPVKEKIGRF-IDNSYSCINCNEY-ETLDHVIL 276
N + +W + + + W N + +++ + SC+ C+ ET DH+
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 277 HCTFTKAIW 285
C ++ +W
Sbjct: 424 TCPYSAEVW 432