BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1960.1
(476 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 92 3e-20
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 87 5e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 74 6e-14
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 72 3e-13
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 63 2e-10
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 127/295 (43%), Gaps = 21/295 (7%)
Query: 184 IPRVKLFVWKCCTNSLPVRDK-IGKFIGGIFNCGYCNDRKTMMHVLLHCEFAKSVWFLFN 242
+P++KLF+WK +LPV + + + I ++C C +T H+L HC+FA VW L
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 243 I----------ISENINSLQDWIISWKDVDTDTQVLFSTVLWHIWKARYEKCLAQSQ-TT 291
+ I E +N L+ I+ V T LF + WHIWKAR + S +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIV-LPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 119
Query: 292 HEMMINRIRGSPRLISFSNVNEEVQVSEQSSHIPTSFVQ---IQVDASFTDVTENAGVGC 348
E + ++ + S +V+V+ + T+ VDA++ + AG G
Sbjct: 120 IETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGW 179
Query: 349 FMQDEQSKFKAAAAYMV---KGQNAEECECWAIIKALEWAKHNNIHGLRIESDNLNIIRP 405
Q K + + + E WAI A+ A L + SD+ +I+
Sbjct: 180 VFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDA 239
Query: 406 INNQQSTVYWQSENLMSNIKQLADEVGEVGFSFIPRDRNTRADQLAKWGRMHEGN 460
+N+ S + L+ I+ + + + F FIPR N+ AD AK GN
Sbjct: 240 LNSNVSLN--EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKLSLCISGN 292
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 169/387 (43%), Gaps = 46/387 (11%)
Query: 103 DLVEQLITHNHWNTNILSQYFNTNICNAILSINLQAHQV-DTARWSLTKTGNFTIKSMY- 160
DL+++ + W +++ F I + ++ D+ W T +G++T+KS Y
Sbjct: 173 DLIDE--SGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYW 230
Query: 161 ---NFLRDASNQNEMKE------WKFIWDLPVIPRVKLFVWKCCTNSLPVRDKIG-KFIG 210
+ S+ E+ E ++ IW P+++ F+WKC +NSLPV + + +
Sbjct: 231 VLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLS 290
Query: 211 GIFNCGYCND-RKTMMHVLLHCEFAKSVWFLFNII-------SENINSLQDWIISWKDVD 262
C C ++T+ H+L C FA+ W + +I +++I W+ + + +
Sbjct: 291 KESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGN 350
Query: 263 TD---TQVLFSTVLWHIWKARYEKCLAQSQTTHEMMINRIRGSPRLISFSNVNEEVQVSE 319
L +LW +WK R E + + ++ R E
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP 410
Query: 320 QSSH--------IPTSFVQIQVDASFTDVTENAGVGCFMQDEQSKFK-AAAAYMVKGQNA 370
Q + P +V+ DA++ E G+G +++E+ + K A + K ++
Sbjct: 411 QVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSV 470
Query: 371 EECECWAIIKALEWA----KHNNIHGLRIESDNLNIIRPINNQQSTVYWQS-ENLMSNIK 425
E E ++A+ WA + + ESD+ +I +NN + W S + + +++
Sbjct: 471 LEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQ 523
Query: 426 QLADEVGEVGFSFIPRDRNTRADQLAK 452
+L + EV F FIPR+ NT A+++A+
Sbjct: 524 RLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 56/315 (17%)
Query: 178 IWDLPVIPRVKLFVWKCCTNSLPVRDKIG-KFIGGIFNCGY-CNDRKTMMHVLLHCEFAK 235
IW L P++K F+WK + +L D + + I C C + +T H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 236 SVWFLFNIISENINSLQDWIISWKDVDTDTQVLFST---------------VLWHIWKAR 280
VW I + + + + ++T ++L S+ +LW +WK+R
Sbjct: 78 QVWRASGIPHQELRT------TGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSR 131
Query: 281 YEKCLAQSQTTHEMMINRIRGSPRLISFSNVNEEVQVSEQSSH----------------I 324
+ Q + + + R R + + + N VQ Q H
Sbjct: 132 NQLVFQQKSISWQNTLQRARND--VQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRP 189
Query: 325 PTSFVQIQVDASFTDVTENAGVGCFMQDEQSKFKAAAAYMVKGQ-------NAEECECWA 377
P+++++ D +F T NA G M+DE YM GQ ++ E E A
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRDEN------GVYMGSGQAIGSTTSDSLESEFQA 243
Query: 378 IIKALEWAKHNNIHGLRIESDNLNIIRPINNQQSTVYWQSENLMSNIKQLADEVGEVGFS 437
+I A++ A + E D+ + +NN++ + + N + + E F
Sbjct: 244 LIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGRFWQKRFEEAVFK 301
Query: 438 FIPRDRNTRADQLAK 452
++PR N AD LAK
Sbjct: 302 WVPRTNNQPADILAK 316
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 168/401 (41%), Gaps = 68/401 (16%)
Query: 103 DLVEQLITHNHWNTNILSQYFNTNICNAILSINL-QAHQVDTARWSLTKTGNFTIKSMYN 161
+L E+ ++ W+ + +SQ+ + + I I L ++ + D W+ TG +T++S Y
Sbjct: 77 NLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYW 136
Query: 162 FLRDASNQN-----------EMKEWKFIWDLPVIPRVKLFVWKCCTNSLPVRDKI---GK 207
L + N ++K IW+LP++P++K F+W+ + +L +++ G
Sbjct: 137 LLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWRALSQALATTERLTTRGM 194
Query: 208 FIGGIFNCGYCN-DRKTMMHVLLHCEFAKSVW-----------FLFNIISENINSLQDWI 255
I +C C+ + +++ H L C FA W + N ENI+++ +++
Sbjct: 195 RIDP--SCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFV 252
Query: 256 ISWKDVDTDTQVLFSTVLWHIWKARYEKCLAQSQTTHEMMINRIRGSPRLISFSNVNE-- 313
D ++L ++W IWKAR + ++ N+ R SP S E
Sbjct: 253 QDTTMSDFH-KLLPVWLIWRIWKAR-----------NNVVFNKFRESPSKTVLSAKAETH 300
Query: 314 ---------------EVQVSEQS---SHIPTSFVQIQVDASFTDVTENAGVGCFM--QDE 353
Q++E + P ++V+ DA F DV + G ++
Sbjct: 301 DWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHY 359
Query: 354 QSKFKAAAAYMVKGQNAEECECWAIIKALEWAKHNNIHGLRIESDNLNIIRPINNQQSTV 413
+ + + N E E A++ AL+ + +E D +I IN +
Sbjct: 360 GTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--ISF 417
Query: 414 YWQSENLMSNIKQLADEVGEVGFSFIPRDRNTRADQLAKWG 454
+ N + +I A++ + F FI R N A LAK+G
Sbjct: 418 HSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 55/314 (17%)
Query: 178 IWDLPVIPRVKLFVWKCCTNSLPVRDKI-GKFIGGIFNCGYCN-DRKTMMHVLLHCEFAK 235
IW L V P++K F+W+C T +L ++ + I C C + +T+ H++ +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 236 SVWFLFNII-----------SENINSLQDWIISWKDVDTDTQVLFSTVLWHIWKARYEKC 284
SVW NII +N+N L + + ++ + L ++W +WK+R
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQ-LSKTQTTNSLDRFLPFWIMWRLWKSRNVFL 155
Query: 285 LAQSQTTHEMMINRIRGSPRLISFSNVNEEVQVSEQSSHIPTSFVQI-QVDASFTDVTEN 343
Q + + +G + N NE + + H+ T+ +Q + D+S +
Sbjct: 156 FQQKCQSPDYEAR--KGIQDATEWLNANETTE--NTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 344 AGVGCFMQDEQSKFKAAAAYMVKGQNAEEC---------------------ECWAIIKAL 382
V C + S + + Y G EC E + AL
Sbjct: 212 GWVKC---NFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHAL 268
Query: 383 E--WAKHNNIHGLR---IESDNLNIIRPINNQQSTVYWQSENLMSNIKQLADEVGEVGFS 437
+ WA HGLR ESD+ +++ INN + + L+ +I+ ++
Sbjct: 269 QVIWA-----HGLRYVWFESDSKSLVTLINNGEDHSLLGT--LIYDIRHWMLKLPYCSLE 321
Query: 438 FIPRDRNTRADQLA 451
F+ R+RN+ AD LA
Sbjct: 322 FVNRERNSAADALA 335