BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g1990.1
(231 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 79 7e-17
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 48 4e-07
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 79.0 bits (193), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 12 LAERFKDTLNAIIAPFQAAYVPGRQITDNIIMGQEIIHSFKKMKGPTGYFGLKLDMPKAF 71
+ ER K + +I P QA+++PGR TDNI+ QE +HS ++ KG G+ LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 72 DIIEWKFLLDIVRKLGYDDHWIQMI 96
D I W +L D + G+ + W+ I
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEI 85
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 48.1 bits (113), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 108 LINGRPGPVFYPSRGIRQGDPLSPFLFTLAMEGLSPGCK 146
+ING P + PSRG+RQGDPLSP+LF L E LS C+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCR 51