BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g2080.1
(311 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 74 1e-15
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 73.6 bits (179), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 125 VLVDPSKAEVVLYWKQPTSVTEIRGFVVLVGYYLQFIKGFSSIAGPLTNLTKKGVVFSWD 184
V DP+K E ++ W +P + TE+RGF+ L GYY +F+K + I PLT L KK + W
Sbjct: 44 VSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL-KWT 102
Query: 185 TKCDEAWKELKTKLTTAPVLVIPESATRFV 214
A+K LK +TT PVL +P+ FV
Sbjct: 103 EMAALAFKALKGAVTTLPVLALPDLKLPFV 132