BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g2380.1
(632 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 144 3e-36
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 102 2e-22
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 102 2e-22
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 98 6e-21
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 93 3e-20
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 144 bits (362), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 227/561 (40%), Gaps = 115/561 (20%)
Query: 152 AVPRYQMQCFAIPKGVSNCIETLQRSFWW---GKNKSIHTINWSKICCPRRYGGLGLRLP 208
A+P Y M CF +PK V I ++ FWW + K +H W + C + GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 209 HLDNVAFLG-------------------------------PLNEINKFIFWD-------- 229
N+A LG PL F++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 230 -------VNKGTNVNIWNDYWIPN---------HRPPIMNHNNCPFDL-VEKLI--RNHN 270
V G ++ IW W+ + R P + + L V LI
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 271 WNIDLLDTYFTEDIRRAILSINIHPQAE---DNMIWTLTKSGTFTLKSMYLQLRM----R 323
W D+++ F E R+ I + P D+ W T SG +T+KS Y L R
Sbjct: 182 WRKDVIEMLFPEVERKLI--GELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 324 DTNAELTN------WNFIWNIQTIPRIKLFIWKCCTNSLPVRDKIG-KYIGNNYMCSFCT 376
+ E++ + IW QT P+I+ F+WKC +NSLPV + +++ C C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 377 EI-ETSSHILLHCHYARAIWHYFNIRTSNFPTVIDWI------VFWLTMDEEGRARMAK- 428
ET +H+L C +AR W I + P +W ++W+ G + K
Sbjct: 300 SCKETVNHLLFKCTFARLTWA---ISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKA 356
Query: 429 ------IMWFIWKARCEKSFGKIDSTPLQTIHRIQCFDTTLRV--------PKPQTKKAD 474
++W +WK R E F + + + R + R+ KPQ ++
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416
Query: 475 KPRWQPPEPLFLKINVDASFTHYTEPAGIGGIIHDDCGD--FIIARAGPIRGQTAEECES 532
RW+PP ++K N DA++ E GIG ++ ++ G+ ++ ARA P E
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE---- 472
Query: 533 IALLEAIKWA----SELNITHLQIESDNCNLINHLNNQQDNINWQSKNYLDQIKSFQGNF 588
A LEA++WA S ++ ESD+ LI LNN D I K + ++ F
Sbjct: 473 -AELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQDLQRLLSQF 529
Query: 589 VQLQFHYGPRTINTQANHLAK 609
+++F + PR NT A +A+
Sbjct: 530 TEVKFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/433 (22%), Positives = 160/433 (36%), Gaps = 74/433 (17%)
Query: 29 IKHLLFADDCIIFGRNTLDNITNLLNILHSFGQESGQMINYNKSTIFFTKNTHPKFKLII 88
I HL FADD ++F +I +L I F SG I+ KSTI+ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 IKSLKVHQASSLDKYLGTKLFIDAKKKLAFSSLVDQIQSKLSKWQSNLLSQAGRAVVVSA 148
+ S + +YLG L + LV++I+ ++ KW + LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 VAAAVPRYQMQCFAIPKGVSNCIETLQRSFWWGK---NKSIHTINWSKICCPRRYGGLGL 205
V ++ + M F +P I+++ SF W N + WS +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 206 R-LPHLDNVAFLG----------------PLNEINKFIFW-------------------- 228
R L + V+ L L + K FW
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 229 ---------DVNKGTNVNIWNDYW--------IPNHRP----PIMNHNNCPFDLVEKLIR 267
D++ G+N + W D W + HR I H + +V R
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 268 NHNWNIDLLDTYFTEDIRRAILSINIHPQAEDNMIWTLTK---SGTFTLKSMYLQLRMRD 324
H + L ++R L+ ED + W F K + R+
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLT-----SGEDTVRWKGNGDIFKPCFNTKETWAA--TRE 359
Query: 325 TNAELTNWNFIWNIQTIPRIKLFIWKCCTNSLPVRDKIGKY-IGNNYMCSFCTE-IETSS 382
++ + +W P+ + W N L D++ + G + C C +ET
Sbjct: 360 PKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRD 419
Query: 383 HILLHCHYARAIW 395
H+ C Y+ +W
Sbjct: 420 HLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/433 (22%), Positives = 160/433 (36%), Gaps = 74/433 (17%)
Query: 29 IKHLLFADDCIIFGRNTLDNITNLLNILHSFGQESGQMINYNKSTIFFTKNTHPKFKLII 88
I HL FADD ++F +I +L I F SG I+ KSTI+ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 IKSLKVHQASSLDKYLGTKLFIDAKKKLAFSSLVDQIQSKLSKWQSNLLSQAGRAVVVSA 148
+ S + +YLG L + LV++I+ ++ KW + LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 VAAAVPRYQMQCFAIPKGVSNCIETLQRSFWWGK---NKSIHTINWSKICCPRRYGGLGL 205
V ++ + M F +P I+++ SF W N + WS +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 206 R-LPHLDNVAFLG----------------PLNEINKFIFW-------------------- 228
R L + V+ L L + K FW
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 229 ---------DVNKGTNVNIWNDYW--------IPNHRP----PIMNHNNCPFDLVEKLIR 267
D++ G+N + W D W + HR I H + +V R
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 268 NHNWNIDLLDTYFTEDIRRAILSINIHPQAEDNMIWTLTK---SGTFTLKSMYLQLRMRD 324
H + L ++R L+ ED + W F K + R+
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLT-----SGEDTVRWKGNGDIFKPCFNTKETWAA--TRE 359
Query: 325 TNAELTNWNFIWNIQTIPRIKLFIWKCCTNSLPVRDKIGKY-IGNNYMCSFCTE-IETSS 382
++ + +W P+ + W N L D++ + G + C C +ET
Sbjct: 360 PKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRD 419
Query: 383 HILLHCHYARAIW 395
H+ C Y+ +W
Sbjct: 420 HLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 99/429 (23%), Positives = 160/429 (37%), Gaps = 68/429 (15%)
Query: 29 IKHLLFADDCIIFGRNTLDNITNLLNILHSFGQESGQMINYNKSTIFFTKNTHPKFKLII 88
I HL FADD ++F +I +L I F SG I+ KSTI+ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 IKSLKVHQASSLDKYLGTKLFIDAKKKLAFSSLVDQIQSKLSKWQSNLLSQAGRAVVVSA 148
+ S + +YLG L + LV++I+ ++ KW + LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 VAAAVPRYQMQCFAIPKGVSNCIETLQRSFWWGK---NKSIHTINWSKICCPRRYGGLGL 205
V ++ + M F +P I+++ SF W N + WS +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 206 R-LPHLDNVAFLG----------------PLNEINKFIFW-------------------- 228
R L + V+ L L + K FW
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 229 ---------DVNKGTNVNIWNDYWIPNHRP-PIMNHNNCPFDL-------VEKLIRNHNW 271
D++ G+N + W D W R + H C D+ V + + NH
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGC-IDMGITLHASVAEAVVNHRP 305
Query: 272 NIDLLDTYF-TEDIRRAILSINIHPQAEDNMIWTLTKS---GTFTLKSMYLQLRMRDTNA 327
DT ED+ + + ED + W F K + R+
Sbjct: 306 RRHRHDTLLRIEDVIAEVRHQGL-TSGEDTVRWKGNGDIFKPCFNTKETWAA--TREPKL 362
Query: 328 ELTNWNFIWNIQTIPRIKLFIWKCCTNSLPVRDKIGKY-IGNNYMCSFCTE-IETSSHIL 385
++ + +W P+ + W N L D++ + G + C C +ET H+
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 386 LHCHYARAI 394
C Y+ +
Sbjct: 423 FTCPYSAEV 431
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 44/309 (14%)
Query: 335 IWNIQTIPRIKLFIWKCCTNSLPVRDKIGK-YIGNNYMC-SFCTEIETSSHILLHCHYAR 392
IW ++T P+IK F+WK + +L D + + +I N+ C C E ETS H+ C YA+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 393 AIWHYFNIRTSNFPTVIDWIVFWLTMDEEGRARMAK---------------IMWFIWKAR 437
+W I T +TM+ + ++ I+W +WK+R
Sbjct: 78 QVWRASGIPHQELRTTG------ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSR 131
Query: 438 CEKSFGKIDSTPLQTIHR--------------IQCFDTTLRVPKPQTKKADKPRWQPPEP 483
+ F + + T+ R +Q + + + Q + +WQ P
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPS 191
Query: 484 LFLKINVDASFTHYTEPAGIGGIIHDDCGDFIIARAGPIRGQTAE---ECESIALLEAIK 540
++K N D +F H T A G ++ D+ G ++ +G G T E E AL+ A++
Sbjct: 192 TWIKYNYDGAFNHQTRNAKAGWLMRDENGVYM--GSGQAIGSTTSDSLESEFQALIIAMQ 249
Query: 541 WASELNITHLQIESDNCNLINHLNNQQDNINWQSKNYLDQIKSFQGNFVQLQFHYGPRTI 600
A + E D+ + +NN + +N+ N++ + + +Q F + F + PRT
Sbjct: 250 HAWSQGYRKVIFEGDSKQVEELMNN--EKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTN 307
Query: 601 NTQANHLAK 609
N A+ LAK
Sbjct: 308 NQPADILAK 316