BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000051.1_g2420.1
(800 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 134 3e-32
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 80 9e-16
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 58 8e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 55 2e-07
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 55 2e-07
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 193/409 (47%), Gaps = 39/409 (9%)
Query: 142 IIIGDLNTILHPHDKMGG-NPSLPTHA-RKIKNYIHSLGLQDLGFSGNPFTWSNRQFSGK 199
I++GD + I D S+P + +N + L D+ G +TWSN Q
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNP 281
Query: 200 LIQERLDRALSNHQWMIDYPDS-TLHHMQGVGSDHIPILLTTKLRSLPGR--KPFKFIRT 256
+I+ +LDRA++N W +P + + + GV SDH P ++ L +LP R K F++
Sbjct: 282 IIR-KLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIII--LENLPKRSKKCFRYFSF 337
Query: 257 WMSHPDCSDFIKLNWPPNQNFIHNKLNSLAINLSH-------WNKKVFGHLKTKIKFLTN 309
+HP + + W Q + + + SL +L N++ FG+++ K K +
Sbjct: 338 LSTHPTFLVSLTVAWE-EQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALD 396
Query: 310 ALQSVQTH------ESLSDLNRQLEEAYN----QQESLWKEKSRTNNVQLGDKNTKNFHS 359
+L+S+Q+ +SL + + +N ES +++KSR +Q GD NT+ FH
Sbjct: 397 SLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHK 456
Query: 360 KAIQRNRKNHISSIRNDDNTWSQDEPEIANI---FSSHLKSISTSADSVIDDSVLNLFSP 416
+ KN I +R DD+ ++ ++ + + +HL + + +D + DSV +
Sbjct: 457 VILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHL--LGSDSDILTPDSVQRI--K 512
Query: 417 QISASQNNDLIKP-----PTNDEIRRAVFSLKSDAAPGPDGYPPFFYKSNWETVESDINS 471
I + ND + P++ EI AVF++ + APGPD + F+ +W V+ +
Sbjct: 513 DIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIA 572
Query: 472 MVTHFFSNSTLPPSSNHTHICLIPKSKSPQSPSDYRPISLLNTTYKIIT 520
V FF L N T I LIPK S +RP+S YKIIT
Sbjct: 573 AVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 523 LANRFKSTLDDIISPYQAAYVPGRQITDNIIISQEMSHFYKTKKGSKSYFGLKLDMSKAF 582
+ R K + ++I P QA+++PGR TDNI+ QE H + KKG K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 583 DRVEWSFLESIMAQLGYSNHWI 604
DR+ W +LE + G+ W+
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 57.8 bits (138), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%)
Query: 619 LINGRPGPSFNISRGLRQGDHLSPFLFTLAMEGLNRLLESSNSPQNFIGFPIPNSDININ 678
+ING P SRGLRQGD LSP+LF L E L+ L + G + N+ IN
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 679 HLLFADD 685
HLLFADD
Sbjct: 73 HLLFADD 79
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 677 INHLLFADDCIIFGQNSLDNIDNLKKILATFSAASGQIINYSKSTIFFSKNTHPKFKRII 736
I HL FADD ++F +I+ + +I F+ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 737 IRSLKVHQSSSLDKYLGTHLFIGASKQQAFSSILDHIQTKLSKWHSNLLSQAGRSIVLST 796
+ S + +YLG L + +++ I+ ++ KW + LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 797 I 797
+
Sbjct: 127 V 127
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 677 INHLLFADDCIIFGQNSLDNIDNLKKILATFSAASGQIINYSKSTIFFSKNTHPKFKRII 736
I HL FADD ++F +I+ + +I F+ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 737 IRSLKVHQSSSLDKYLGTHLFIGASKQQAFSSILDHIQTKLSKWHSNLLSQAGRSIVLST 796
+ S + +YLG L + +++ I+ ++ KW + LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 797 I 797
+
Sbjct: 127 V 127