BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000054.1_g0130.1
(545 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 154 4e-40
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 117 7e-28
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 84 3e-17
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 75 1e-15
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 80 2e-15
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 154 bits (388), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 140/561 (24%), Positives = 256/561 (45%), Gaps = 61/561 (10%)
Query: 1 MAIFDLPCKIKKTITSLQRDFWWGITNNKKKIYFKNWNSICQPKSKGGLGLRNIQKDNLS 60
MA F LP + K I S+ DFWW K +++K W+ + K++GG+G ++I+ NL+
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 61 LRSKLNWTFRTKPSTLWVKHVRAKY----SPQLRGRHLSSSWLWKSINKNQQMVDSNIIW 116
L K W ++P +L K +++Y P S++WKSI+ +Q+++
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 DIGDGTNINIWEDSWI---PGLGKLGSPSSQP-------NLSTVSQLIDEDN-SWNHTLI 165
+G+G +I IW W+ P L P ++ VS LIDE W +I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 166 SSLFSTDIQQRILAIPLKSHH---DSQKWMLSQSGNFSVSSLY---KHLIHQNTTPTSFK 219
LF +++++++ DS W + SG+++V S Y +I++ ++P
Sbjct: 188 EMLF-PEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVS 246
Query: 220 ------YWKQFWKLNLHPRIQVFCWK-LAHDIPPLNLKISRYFPQLSSI--CPLCNLEEE 270
+++ WK P+IQ F WK L++ +P R+ + S+ CP C +E
Sbjct: 247 EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC---KE 303
Query: 271 SQNHFLQACPVVRKVIYSLTKINL---NEINTSNFSE--WFFHIDNLASEADQDSYFSLI 325
+ NH L C R + ++++ I + E S + W F++ N + ++ S
Sbjct: 304 TVNHLLFKCTFAR-LTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKAS----- 357
Query: 326 ELAVTSLWLTWKHRCSIIFDEIPLNISNLIHSIQSYISQQAHSGSYNRAGSQPH--RS-- 381
+L LW WK+R ++F N ++ + + + G++P RS
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSC 417
Query: 382 -IWTPPPIGFIKINYDVSFLAQDLSSFLAFIVTDFTGTPE-IKESITTTSRSVDEGEGKA 439
W PPP ++K N D ++ + + +++ + G + + +SV E E
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE--- 474
Query: 440 ALAGVQWAIKHGAR----NLILEGDSSNVANFLNGSPNSIHWTAKHVMKDIKMLISSFDC 495
L ++WA+ +R +I E DS + LN + I + K ++D++ L+S F
Sbjct: 475 -LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQDLQRLLSQFTE 531
Query: 496 INFTYVNRKSNALANSLACSS 516
+ F ++ R+ N LA +A S
Sbjct: 532 VKFVFIPREGNTLAERVARES 552
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 117 bits (293), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 189/441 (42%), Gaps = 30/441 (6%)
Query: 97 SWLWKSINKNQQMVDSNIIWDIGDGTNINIWEDSWIPG--LGKLGSPSSQPNLSTVSQLI 154
S+ W S+ ++ IGDG NI I D+ + L + + + T++ L
Sbjct: 21 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEM-TINNLF 79
Query: 155 DEDNS---WNHTLISSLFSTDIQQRILAIPLKSHHDSQK--WMLSQSGNFSVSSLYKHLI 209
+ S W+ + IS I I L K W + +G ++V S Y L
Sbjct: 80 ERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLT 139
Query: 210 HQNTT--PT------SFKYWKQFWKLNLHPRIQVFCWKLAHDIPPLNLKISRYFPQLSSI 261
H +T P S + W L + P+++ F W+ +++ ++
Sbjct: 140 HDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS 199
Query: 262 CPLCNLEEESQNHFLQACPVVRKVIYSLTKINL--NEINTSNFSEWFFHIDNLASEADQD 319
CP C+ E ES NH L CP + + L+ +L N++ +++F E +I N +
Sbjct: 200 CPRCHRENESINHALFTCPFA-TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMS 258
Query: 320 SYFSLIELAVTSLWLTWKHRCSIIFDEIPLNISNLIHSIQSYISQQAHSGSYNRAGSQPH 379
+ L L V +W WK R +++F++ + S + S ++ ++ ++ P
Sbjct: 259 DFHKL--LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT 316
Query: 380 RSI------WTPPPIGFIKINYDVSFLAQDLSSFLAFIVTDFTGTPEIKESITTTSRSVD 433
R I W PP ++K N+D F Q L + +I+ + GTP S+ S
Sbjct: 317 RQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNP 376
Query: 434 -EGEGKAALAGVQWAIKHGARNLILEGDSSNVANFLNGSPNSIHWTAKHVMKDIKMLISS 492
E E KA LA +Q G + +EGD + N +NG S H + + ++DI +
Sbjct: 377 LEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI--SFHSSLANHLEDISFWANK 434
Query: 493 FDCINFTYVNRKSNALANSLA 513
F I F ++ RK N LA+ LA
Sbjct: 435 FASIQFGFIRRKGNKLAHVLA 455
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 20/305 (6%)
Query: 223 QFWKLNLHPRIQVFCWKLAHDIPPLNLKISRYFPQLSSICPLCNLEEESQNHFLQACPVV 282
+ WKL P+I+ F WKL + R + C C E+E+ H C
Sbjct: 17 KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76
Query: 283 RKVIYSLTKINLNEINTSNFSEWFFHIDNLASEADQDSYFSLIELAVTSLWLTWKHRCSI 342
++V + + I E+ T+ + ++ L S + L LA+ LW WK R +
Sbjct: 77 QQV-WRASGIPHQELRTTGITM-ETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQL 134
Query: 343 IFDEIPLNISNLIH----SIQSY---------ISQQAHSGSYNRAGSQPHRSIWTPPPIG 389
+F + ++ N + +Q + ++QQ HS + + R+ W PP
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMA--RTKWQRPPST 192
Query: 390 FIKINYDVSFLAQDLSSFLAFIVTDFTGT-PEIKESITTTSRSVDEGEGKAALAGVQWAI 448
+IK NYD +F Q ++ +++ D G ++I +T+ E E +A + +Q A
Sbjct: 193 WIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAW 252
Query: 449 KHGARNLILEGDSSNVANFLNGSPNSIHWTAKHVMKDIKMLISSFDCINFTYVNRKSNAL 508
G R +I EGDS V +N +++ + +++ + F+ F +V R +N
Sbjct: 253 SQGYRKVIFEGDSKQVEELMNNE--KLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQP 310
Query: 509 ANSLA 513
A+ LA
Sbjct: 311 ADILA 315
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 1 MAIFDLPCKIKKTITSLQRDFWWGITNNKKKIYFKNWNSICQPKS-KGGLGLRNIQKDNL 59
M+ F L + K +TS +FWW NK+KI + W +C+ K GGLG R++ N
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 60 SLRSKLNWTFRTKPSTLWVKHVRAKYSPQLRGRHLS----SSWLWKSINKNQQMVDSNII 115
+L +K ++ +P TL + +R++Y P S S+ W+SI ++++ ++
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 WDIGDGTNINIWEDSWI 132
IGDG + +W D WI
Sbjct: 128 RTIGDGIHTKVWLDRWI 144
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 162/390 (41%), Gaps = 35/390 (8%)
Query: 1 MAIFDLPCKIKKTITSLQRDFWW-GITNNKKKIYFKNWNSICQPKSKGGLGLRNIQKDNL 59
M+ F LP K I S+ F W G N KK W+ +C PK +GGLG+R++++ N
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVA-WSDVCTPKDEGGLGIRSLKEANK 140
Query: 60 SLRSKLNWTFRTKPSTLWVKHVRAKYSPQ-----LRGRHLSSSWLWKSINKNQQMVDSNI 114
KL W + S LWV+ +R + + G SW+WK I K++ + +
Sbjct: 141 VSLLKLIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFV 199
Query: 115 IWDIGDGTNINIWEDSW------IPGLGKLGSPSSQPNL-STVSQLIDEDNSWNHTLISS 167
DI +G+N + W D+W I G G L ++V++ + H +
Sbjct: 200 KHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTL 259
Query: 168 LFSTDIQQRILAIPLKSHHDSQKWMLSQSGNFSVSSLYKHLIHQNTTPTSFK-------Y 220
L D+ + L S D+ +W GN ++K + T + + +
Sbjct: 260 LRIEDVIAEVRHQGLTSGEDTVRW----KGN---GDIFKPCFNTKETWAATREPKLKVNW 312
Query: 221 WKQFWKLNLHPRIQVFCWKLAHDIPPLNLKISRYFPQLSSICPLCNLEEESQNHFLQACP 280
+K W + P+ V W + ++ + S C LC+ E+++H CP
Sbjct: 313 YKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCP 372
Query: 281 VVRKVIYSLTKINLNEINTSNFSEWFFHIDN--LASEADQDSYFSLIELAVTSLWLTWKH 338
+V +LT+ L++ T+ + + N L E + ++ +L + SL WK
Sbjct: 373 YSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTF-QLTLHSL---WKE 428
Query: 339 RCSIIFDEIPLNISNLIHSIQSYISQQAHS 368
R E+P + ++ + + + S
Sbjct: 429 RNGRRHGEVPQAAAQMVRFLDKQVRNRISS 458