BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000054.1_g0190.1
(1178 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 150 1e-37
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 135 1e-32
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 128 1e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 128 1e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 122 5e-28
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 193/415 (46%), Gaps = 48/415 (11%)
Query: 799 AVPRYQMQCFAIPKGISNRIEALQRSFWW---GKAKSIHTIKWSRICKPRKEGGLGFRLP 855
A+P Y M CF +PK + +I ++ FWW +AK +H W + + EGG+GF+
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 856 ILDNQAFLSKLVWRALKNPDTPWALILKSKYFPK-QPQPKAVNQTHSWLWKSMFKQYHQV 914
N A L K +WR L P++ A + KS+YF K P + S++WKS+ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 915 SQLIFWEVHKGTKVNIWRDFWIPNHP----------PPIENHHNSKLETVSQLINNN--Q 962
Q V G + IWR W+ + P PP E S + VS LI+ + +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 963 WNKNIIMQTFEPNICNAILGINLQESNE---DTRRWTLTKTGNFSIRSMYHFLRQ---KN 1016
W K++I F P + ++G L+ D+ W T +G+++++S Y L Q K
Sbjct: 182 WRKDVIEMLF-PEVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 1017 QNDQDTEMIKWN----FIWDLNTIPRIKLFLWKCCTNSLPVRDRIG-KYIGNITTCTYCD 1071
+ Q+ N IW T P+I+ FLWKC +NSLPV + +++ + C C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 1072 TL-ETLSHILLKCDYARQIWG--------------QFHVHSDRIDNLEEWIIQWKDLEKE 1116
+ ET++H+L KC +AR W +V+ + NL QW+ +
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ- 358
Query: 1117 QIILFAKIIYFIWKARCEKIFAGRDQSPMQVVAVIKKHRSNDETTPKCQTQGSRP 1171
L +++ +WK R E +F GR+ + +V+ + + ++ G++P
Sbjct: 359 ---LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP 410
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 179/404 (44%), Gaps = 31/404 (7%)
Query: 141 VIIGDLNTILHPEEKMGG-SPHIPAHVKGINSIINKL---GVRDVGFSGYPYTWSNRQFS 196
+++GD + I + IP ++G+ N L + D+ G YTWSN Q
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIP--MRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDD 279
Query: 197 GNLIRERLDRALTNDNWLIEFPGT-NLSHLPGVGSDHIPILLTTTPKLRLGPKPFKFIRT 255
+IR +LDRA+ N +W FP + L GV SDH P ++ + K F++
Sbjct: 280 NPIIR-KLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSF 337
Query: 256 WMSHPECSQFILEKWTFNPAHIQLSLNQLAGHLSR-------WNKEVFGNIDNKIKNLTT 308
+HP + W + + L HL N++ FGNI +K K
Sbjct: 338 LSTHPTFLVSLTVAWE-EQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALD 396
Query: 309 QLQGLRDQ------DTVHRISKELEEAYN----QQESLWREKARIDNIQLGDRNTKYFHS 358
L+ ++ Q D++ R+ + +N ES +R+K+RI +Q GD NT++FH
Sbjct: 397 SLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHK 456
Query: 359 KAIHRGRKNQIMTIKKEDNTWTNDHIEIASIFQTNLKDISTSNGYI----AENNILSLFT 414
+ KN I ++ +D+ + ++ + + S+ I + I +
Sbjct: 457 VILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHP 516
Query: 415 TQITEAQNSTMTATPSIEEIKNAVFSLKPHAAPGPDGYPPFFYQSNWETVSKDIEAVVRN 474
+ + S ++A PS +EI AVF++ + APGPD + F+ +W V A V+
Sbjct: 517 FRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKE 576
Query: 475 FFNYNFLPEGANHTHLCLIPKTKTPQHTADYRPISLLNTTYKII 518
FF L + N T + LIPK + +RP+S YKII
Sbjct: 577 FFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKII 620
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 130/525 (24%), Positives = 213/525 (40%), Gaps = 51/525 (9%)
Query: 676 IKHLLFADDCIIFGRNSIDNINTLMNILEIFGKNSGQVINYSKSTIFFSKNTHPKFKRMI 735
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 736 IRTLKVHQSSNLDKYLGTHLFIGANKKQVFSSLISQIQCKLSKWHTNLLSQAGRSVVVST 795
+ + + +YLG L + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 796 IAAAVPRYQMQCFAIPKGISNRIEALQRSFWWG-------KAKSIHTIKWSRICKPRKEG 848
+ ++ + M F +P I+++ SF W KAK + WS +C P+ EG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 849 GLGFRLPILDNQAFLSKLVWRALKNPDTPWALILKSKYFPKQPQPKAVNQT--HSWLWKS 906
GLG R N+ L KL+WR L + + W L+ K T SW+WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 907 MFKQYHQVSQLIFWEVHKGTKVNIWRDFW--------IPNHPPPIE---NHHNSKLETVS 955
+ K S + ++H G+ + W D W + H I+ H S E V
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVV 301
Query: 956 QLINNNQWNKNIIMQTFEPNICNAILGINLQ--ESNEDTRRWTLTKTGNFSIRSMYHFLR 1013
+ ++ I + I + Q S EDT RW GN I +
Sbjct: 302 NHRPRRHRHDTLL------RIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTK 351
Query: 1014 QKNQNDQDTEM-IKW-NFIWDLNTIPRIKLFLWKCCTNSLPVRDRIGKY-IGNITTCTYC 1070
+ ++ ++ + W +W + P+ + W N L DR+ + G ++C C
Sbjct: 352 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 1071 DTL-ETLSHILLKCDYARQIWGQF--HVHSDRIDNLEEWIIQW---KDLEKEQIIL---- 1120
L ET H+ C Y+ ++W + S N E I++ K L E L
Sbjct: 412 HHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYT 471
Query: 1121 FAKIIYFIWKARCEKIFAGRDQSPMQVVAVIKKHRSNDETTPKCQ 1165
F ++ +WK R + Q+ Q+V + K N ++ + Q
Sbjct: 472 FQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ 516
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 130/525 (24%), Positives = 213/525 (40%), Gaps = 51/525 (9%)
Query: 676 IKHLLFADDCIIFGRNSIDNINTLMNILEIFGKNSGQVINYSKSTIFFSKNTHPKFKRMI 735
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 736 IRTLKVHQSSNLDKYLGTHLFIGANKKQVFSSLISQIQCKLSKWHTNLLSQAGRSVVVST 795
+ + + +YLG L + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 796 IAAAVPRYQMQCFAIPKGISNRIEALQRSFWWG-------KAKSIHTIKWSRICKPRKEG 848
+ ++ + M F +P I+++ SF W KAK + WS +C P+ EG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 849 GLGFRLPILDNQAFLSKLVWRALKNPDTPWALILKSKYFPKQPQPKAVNQT--HSWLWKS 906
GLG R N+ L KL+WR L + + W L+ K T SW+WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 907 MFKQYHQVSQLIFWEVHKGTKVNIWRDFW--------IPNHPPPIE---NHHNSKLETVS 955
+ K S + ++H G+ + W D W + H I+ H S E V
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVV 301
Query: 956 QLINNNQWNKNIIMQTFEPNICNAILGINLQ--ESNEDTRRWTLTKTGNFSIRSMYHFLR 1013
+ ++ I + I + Q S EDT RW GN I +
Sbjct: 302 NHRPRRHRHDTLL------RIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTK 351
Query: 1014 QKNQNDQDTEM-IKW-NFIWDLNTIPRIKLFLWKCCTNSLPVRDRIGKY-IGNITTCTYC 1070
+ ++ ++ + W +W + P+ + W N L DR+ + G ++C C
Sbjct: 352 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 1071 DTL-ETLSHILLKCDYARQIWGQF--HVHSDRIDNLEEWIIQW---KDLEKEQIIL---- 1120
L ET H+ C Y+ ++W + S N E I++ K L E L
Sbjct: 412 HHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYT 471
Query: 1121 FAKIIYFIWKARCEKIFAGRDQSPMQVVAVIKKHRSNDETTPKCQ 1165
F ++ +WK R + Q+ Q+V + K N ++ + Q
Sbjct: 472 FQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ 516
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 181/440 (41%), Gaps = 42/440 (9%)
Query: 676 IKHLLFADDCIIFGRNSIDNINTLMNILEIFGKNSGQVINYSKSTIFFSKNTHPKFKRMI 735
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 736 IRTLKVHQSSNLDKYLGTHLFIGANKKQVFSSLISQIQCKLSKWHTNLLSQAGRSVVVST 795
+ + + +YLG L + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 796 IAAAVPRYQMQCFAIPKGISNRIEALQRSFWWG-------KAKSIHTIKWSRICKPRKEG 848
+ ++ + M F +P I+++ SF W KAK + WS +C P+ EG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 849 GLGFRLPILDNQAFLSKLVWRALKNPDTPWALILKSKYFPKQPQPKAVNQT--HSWLWKS 906
GLG R N+ L KL+WR L + + W L+ K T SW+WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 907 MFKQYHQVSQLIFWEVHKGTKVNIWRDFW--------IPNHPPPIE---NHHNSKLETVS 955
+ K S + ++H G+ + W D W + H I+ H S E V
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVV 301
Query: 956 QLINNNQWNKNIIMQTFEPNICNAILGINLQ--ESNEDTRRWTLTKTGNFSIRSMYHFLR 1013
+ ++ I + I + Q S EDT RW GN I +
Sbjct: 302 NHRPRRHRHDTLL------RIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTK 351
Query: 1014 QKNQNDQDTEM-IKW-NFIWDLNTIPRIKLFLWKCCTNSLPVRDRIGKY-IGNITTCTYC 1070
+ ++ ++ + W +W + P+ + W N L DR+ + G ++C C
Sbjct: 352 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 1071 DTL-ETLSHILLKCDYARQI 1089
L ET H+ C Y+ ++
Sbjct: 412 HHLVETRDHLFFTCPYSAEV 431