BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000054.1_g0280.1
(153 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 50 7e-08
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 42 8e-05
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 42 9e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 50.4 bits (119), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 11 SPNLSQPNTSITNIASFVFEKL--DGSNFLIWKDQFEVILISTDLYGFVDGFVEIPVKSI 68
SP P+ I + + F +KL D N++ WK +F L T +GF+DG + P
Sbjct: 16 SPYYLPPD--IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---- 69
Query: 69 IENNTEVPNPLYLQWQKTDNFVKSGMKATFTHSISSDVPGLQTLREIWRFLELNYVGEYE 128
+ +PLY W++ + V + + T + V +T ++W L +V +
Sbjct: 70 -----DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVD 124
Query: 129 AKIASLHEQIQNIKRGESSATDYL 152
KI L ++ +++G S +Y
Sbjct: 125 LKIYQLRRRLATLRQGGDSVEEYF 148
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 20 SITNIASFVFEKLD--GSNFLIWKDQFEVILISTDLYGFVDGFVEIPVKSIIENNTEVPN 77
++NI S + LD SN+ W++ F +S D+ G +DG +++ N N
Sbjct: 12 GVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDG-------TLLPTNANDVN 64
Query: 78 PLYLQWQKTDNFVKSGMKATFT-HSISSDVPGLQTLREIWRFLELNYVGEYEAKIASLHE 136
WQK D VK + T T T R+IW ++ + +A+ L
Sbjct: 65 -----WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDS 119
Query: 137 QIQNIKRGESSATDYLR 153
+++ G+ DY R
Sbjct: 120 ELRTKDIGDMRVADYYR 136
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 41.6 bits (96), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 21 ITNIASFVFEKLDGS--NFLIWKDQFEVILISTDLYGFVDGFVEIPVKSIIENNTEVPNP 78
I I +++F LD + N+ +W++ FE + +S + G +DG + P P
Sbjct: 15 IMQIRAYIFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDG-------------SSTPTP 61
Query: 79 LY-LQWQKTDNFVKSGMKATFTHSISSDVPGLQ-TLREIWRFLELNYVGEYEAKIASLHE 136
+ +W++ D VK + T T S+ + + T R++W LE + EA+
Sbjct: 62 MTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFEN 121
Query: 137 QIQNIKRGESSATDYLR 153
+++ + S +Y +
Sbjct: 122 ELRTTTIDDLSVHEYCQ 138