BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000054.1_g0330.1
(169 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 97 5e-25
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 3e-17
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 3e-17
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 51 8e-09
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 97.1 bits (240), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 1 LGIEVTKAESSALFLTQKKYALGLLENVDLLDSKPSCTPVSGGNRLSKSDGTI-VSDPTF 59
LGI++ K S LFL+Q KYA +L N +LD KP TP+ +L+ S T DP+
Sbjct: 43 LGIQI-KTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSD 99
Query: 60 YRSIIGGLQYLTTTRPDLAYVVNYDAQFMSEPRSSHVQLMKKI--YVKGTMDCGITIRPG 117
+RSI+G LQYLT TRPD++Y VN Q M EP + L+K++ YVKGT+ G+ I
Sbjct: 100 FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN 159
Query: 118 DVSKLRGYSASDW 130
++ + SDW
Sbjct: 160 SKLNVQAFCDSDW 172
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.0 bits (193), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 1 LGIEVTKAESSALFLTQKKYALGLLENVDLLDSKPSCTPVSGGNRLSKSDGTIVSDPTFY 60
LG+E+ ++ ++ + + Q+KYAL LL+ LL KPS P+ S G D Y
Sbjct: 320 LGLEIARS-AAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Query: 61 RSIIGGLQYLTTTRPDLAYVVNYDAQFMSEPRSSHVQLMKKI--YVKGTMDCGITIRPGD 118
R +IG L YL TR D+++ VN +QF PR +H Q + KI Y+KGT+ G+
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438
Query: 119 VSKLRGYSASDWQA 132
+L+ +S + +Q+
Sbjct: 439 EMQLQVFSDASFQS 452
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.0 bits (193), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 1 LGIEVTKAESSALFLTQKKYALGLLENVDLLDSKPSCTPVSGGNRLSKSDGTIVSDPTFY 60
LG+E+ ++ ++ + + Q+KYAL LL+ LL KPS P+ S G D Y
Sbjct: 320 LGLEIARS-AAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Query: 61 RSIIGGLQYLTTTRPDLAYVVNYDAQFMSEPRSSHVQLMKKI--YVKGTMDCGITIRPGD 118
R +IG L YL TR D+++ VN +QF PR +H Q + KI Y+KGT+ G+
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438
Query: 119 VSKLRGYSASDWQA 132
+L+ +S + +Q+
Sbjct: 439 EMQLQVFSDASFQS 452
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 51.2 bits (121), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 69 YLTTTRPDLAYVVNYDAQFMSEPRSSHVQLMKKI--YVKGTMDCGITIRPGDVSKLRGYS 126
YLT TRPDL + VN +QF S R++ +Q + K+ YVKGT+ G+ +L+ ++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 127 ASDW 130
SDW
Sbjct: 62 DSDW 65